Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087950.1.1 | Tomato | nucleus | 86.57 | 87.22 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 54.85 | 54.65 |
| KRH62181 | Soybean | nucleus | 51.87 | 49.64 |
| CDX83182 | Canola | cytosol | 45.15 | 49.39 |
| CDY21451 | Canola | cytosol | 45.15 | 49.39 |
| CDY45266 | Canola | plastid | 37.69 | 49.27 |
| Bra026211.1-P | Field mustard | plastid | 37.31 | 48.78 |
| KRH52892 | Soybean | nucleus | 51.49 | 48.59 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 44.03 | 48.16 |
| Bra000593.1-P | Field mustard | cytosol | 46.64 | 47.53 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 32.09 | 46.24 |
| AT1G14490.2 | Thale cress | plastid | 38.43 | 45.78 |
| AT5G49700.1 | Thale cress | nucleus | 47.01 | 45.65 |
| KRH72453 | Soybean | nucleus | 44.03 | 43.54 |
| KRH16838 | Soybean | nucleus | 40.67 | 42.58 |
| GSMUA_Achr10P... | Banana | nucleus | 41.42 | 39.78 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 29.48 | 38.54 |
| CDY65376 | Canola | nucleus | 38.43 | 37.45 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 30.97 | 36.56 |
| PGSC0003DMT400045315 | Potato | nucleus | 29.85 | 36.2 |
| PGSC0003DMT400025705 | Potato | plastid | 32.09 | 33.08 |
| Os09t0464300-00 | Rice | nucleus | 39.93 | 32.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.18 | 31.34 |
| PGSC0003DMT400044573 | Potato | cytosol | 29.1 | 31.08 |
| Zm00001d020768_P001 | Maize | cytosol | 38.06 | 30.63 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 38.06 | 30.45 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 38.06 | 30.36 |
| Zm00001d005923_P001 | Maize | nucleus | 38.81 | 30.23 |
| PGSC0003DMT400002959 | Potato | nucleus | 29.85 | 30.19 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 38.06 | 30.0 |
| PGSC0003DMT400045203 | Potato | nucleus | 32.09 | 29.66 |
| PGSC0003DMT400044451 | Potato | nucleus | 31.34 | 29.47 |
| PGSC0003DMT400073795 | Potato | nucleus | 32.46 | 29.29 |
| PGSC0003DMT400004515 | Potato | nucleus | 24.25 | 29.02 |
| OQU89633 | Sorghum | cytosol | 38.06 | 28.81 |
| PGSC0003DMT400033248 | Potato | nucleus | 32.46 | 28.25 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 32.46 | 27.71 |
| PGSC0003DMT400010004 | Potato | nucleus | 30.22 | 27.65 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 29.1 | 26.53 |
| Os08t0478466-01 | Rice | nucleus | 31.34 | 25.93 |
| PGSC0003DMT400032509 | Potato | nucleus | 29.85 | 25.72 |
| KXG25333 | Sorghum | cytosol | 31.34 | 25.23 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | ProteinID:AEJ08744 | ProteinID:AEJ08744.1 | InterPro:AT-hook_nuclear | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EMBL:HM749648 | InterPro:IPR005175 |
| UniProt:M0ZPK9 | PFAM:PF03479 | EnsemblPlantsGene:PGSC0003DMG400002047 | PGSC:PGSC0003DMG400002047 | EnsemblPlants:PGSC0003DMT400005182 | PIRSF:PIRSF016021 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF1 | SUPFAM:SSF117856 | UniParc:UPI00029588E6 |
| SEG:seg | : | : | : | : | : |
Description
AT-hook1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002047]
Coordinates
chr12:-:55771574..55772641
Molecular Weight (calculated)
29022.2 Da
IEP (calculated)
7.193
GRAVY (calculated)
-0.418
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEKYVEERK NHSNNIYTFA KLHQIQNFQL HHQPTVSTAA PPSSSANDGA TIEVIRRPRG RPPGSKNKSK PKPKPEPNFF TAARDDHVER PTMSPYILEI
101: PIGIDIIDSI YRFCGNQNMG LCILNGSGTV TNVTLKQPPI NPADSTITFH GSFNILSISA TIIPSEFSRV ANGFSISLAG PQGQVVGGPV IGPLLAAGPV
201: YLIATTFNNP FYYKFPAEDD GDGGQSPVSG AGDSGQPPES TQHEYCYSSN QLPSDVIWAP TARQLPPY
101: PIGIDIIDSI YRFCGNQNMG LCILNGSGTV TNVTLKQPPI NPADSTITFH GSFNILSISA TIIPSEFSRV ANGFSISLAG PQGQVVGGPV IGPLLAAGPV
201: YLIATTFNNP FYYKFPAEDD GDGGQSPVSG AGDSGQPPES TQHEYCYSSN QLPSDVIWAP TARQLPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.