Factsheet for GSMUA_Achr3P06770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23410_001	Banana	cytosol	60.35	66.83
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	53.74	65.59
GSMUA_Achr10P...	Banana	nucleus	51.98	42.29
GSMUA_Achr11P...	Banana	cytosol	31.72	41.86
GSMUA_AchrUn_...	Banana	nucleus	59.91	40.6
GSMUA_AchrUn_...	Banana	cytosol	29.52	40.12
Bra026211.1-P	Field mustard	plastid	33.92	37.56
CDY45266	Canola	plastid	33.92	37.56
AT1G14490.2	Thale cress	plastid	36.56	36.89
CDX83182	Canola	cytosol	37.89	35.1
CDY21451	Canola	cytosol	37.89	35.1
Bra000593.1-P	Field mustard	cytosol	40.53	34.98
Os09t0464300-00	Rice	nucleus	51.1	34.73
PGSC0003DMT400024250	Potato	cytosol, plastid	40.97	34.57
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	51.1	34.52
TraesCS5D01G252500.1	Wheat	cytosol	50.66	34.33
Zm00001d020768_P001	Maize	cytosol	50.22	34.23
AT5G49700.1	Thale cress	nucleus	41.41	34.06
OQU89633	Sorghum	cytosol	52.42	33.62
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	49.78	33.24
KRH62181	Soybean	nucleus	40.97	33.21
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	42.73	32.99
KRH52892	Soybean	nucleus	40.97	32.75
KRH16838	Soybean	nucleus	36.56	32.42
Os08t0478466-01	Rice	nucleus	46.26	32.41
Zm00001d005923_P001	Maize	nucleus	48.9	32.27
KRH72453	Soybean	nucleus	38.33	32.1
KXG25333	Sorghum	cytosol	45.81	31.23
PGSC0003DMT400005182	Potato	nucleus	36.56	30.97
Solyc12g087950.1.1	Tomato	nucleus	36.12	30.83
GSMUA_Achr2P04080_001	Banana	cytosol	30.84	29.79
CDY65376	Canola	nucleus	35.24	29.09
VIT_18s0001g07380.t01	Wine grape	nucleus	30.84	28.57
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	32.6	28.24
GSMUA_Achr5P19550_001	Banana	cytosol	33.48	28.15
Solyc04g076220.2.1	Tomato	nucleus	40.97	27.68
GSMUA_Achr9P23390_001	Banana	plastid	29.07	25.98
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	32.16	25.44
GSMUA_Achr6P01060_001	Banana	nucleus	31.28	25.36
GSMUA_Achr9P12320_001	Banana	plastid	31.28	25.27
GSMUA_Achr11P...	Banana	nucleus	32.6	25.17
GSMUA_Achr8P14790_001	Banana	plastid	30.4	24.73
GSMUA_Achr9P28280_001	Banana	plastid	31.72	24.0
GSMUA_Achr7P10630_001	Banana	plastid	30.4	23.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	31.28	23.28
GSMUA_Achr1P19850_001	Banana	nucleus	30.4	22.48
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	29.96	22.01
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	24.67	21.96
GSMUA_Achr7P15000_001	Banana	nucleus	26.43	21.51
GSMUA_Achr5P03390_001	Banana	nucleus	24.23	21.24
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	22.91	20.72
GSMUA_Achr1P08290_001	Banana	nucleus	27.31	20.2
GSMUA_Achr5P13920_001	Banana	nucleus	14.54	14.54
GSMUA_Achr3P11300_001	Banana	nucleus	12.78	12.66

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G06770_001	EnsemblPlants:GSMUA_Achr3P06770_001	EnsemblPlants:GSMUA_Achr3T06770_001
InterPro:IPR005175	UniProt:M0SCE4	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF1	SUPFAM:SSF117856	UniParc:UPI0002949171	SEG:seg	:

Description

DNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr3G06770_001]

Coordinates

chr3:+:4568719..4569402

Molecular Weight (calculated)

23639.1 Da

IEP (calculated)

6.860

GRAVY (calculated)

0.013

Length

227 amino acids

Sequence
(BLAST)

001: MRPHLLEIPA GKDVADAIAR FARRRDLGLC VLAGTGSVAN VTLRQSNIGG VPTAAAATIG FHGRFEILSI SATFLSPAVA ALSPGISGQM SISLAGPQGQ
101: VMGGLVVGPL LAAETVVIVA AAFLNPTFHR LPAEDDASLS ISVFGGDVGA AGEVEEQEQH LHHQNQQHQQ QEHQQQRNHG SVAASSSEPC GVSISSRHLS
201: SSVILAPISR PPRPSSPPPL PPYQYYS

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.