Factsheet for GSMUA_Achr5P13920_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03390_001	Banana	nucleus	71.37	62.55
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	57.71	51.37
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	53.74	48.61
VIT_02s0012g00880.t01	Wine grape	cytosol	56.83	45.74
GSMUA_Achr8P14790_001	Banana	plastid	54.63	44.44
GSMUA_Achr9P23390_001	Banana	plastid	48.9	43.7
CDX90445	Canola	plastid	51.54	42.7
KRH58197	Soybean	cytosol	51.1	42.03
AT4G17800.1	Thale cress	cytosol	53.74	41.78
PGSC0003DMT400002959	Potato	nucleus	47.58	40.75
Solyc08g077010.1.1	Tomato	cytosol	51.54	40.62
Bra012639.1-P	Field mustard	cytosol	51.98	40.55
CDX78802	Canola	cytosol	51.98	40.55
PGSC0003DMT400045203	Potato	nucleus	51.54	40.34
Bra040183.1-P	Field mustard	cytosol	51.98	40.27
CDY54780	Canola	cytosol	51.54	40.07
KRH04340	Soybean	cytosol	42.73	38.65
GSMUA_Achr3P11300_001	Banana	nucleus	35.24	34.93
GSMUA_Achr2P04080_001	Banana	cytosol	34.8	33.62
GSMUA_Achr1P19850_001	Banana	nucleus	42.73	31.6
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	42.73	31.39
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	35.68	30.92
GSMUA_Achr5P19550_001	Banana	cytosol	36.56	30.74
GSMUA_Achr1P08290_001	Banana	nucleus	40.97	30.29
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	39.65	29.51
GSMUA_AchrUn_...	Banana	cytosol	21.59	29.34
GSMUA_Achr7P15000_001	Banana	nucleus	35.68	29.03
GSMUA_Achr11P...	Banana	nucleus	37.0	28.57
GSMUA_Achr6P01060_001	Banana	nucleus	34.8	28.21
GSMUA_Achr7P10630_001	Banana	plastid	34.8	27.15
GSMUA_Achr11P...	Banana	cytosol	20.26	26.74
GSMUA_Achr9P12320_001	Banana	plastid	32.6	26.33
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	31.72	25.09
GSMUA_Achr9P28280_001	Banana	plastid	32.6	24.67
GSMUA_Achr10P...	Banana	nucleus	25.55	20.79
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	14.98	18.28
GSMUA_AchrUn_...	Banana	nucleus	25.11	17.01
GSMUA_Achr8P23410_001	Banana	cytosol	14.54	16.1
GSMUA_Achr3P06770_001	Banana	cytosol	14.54	14.54

Protein Annotations

MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G13920_001	EnsemblPlants:GSMUA_Achr5P13920_001	EnsemblPlants:GSMUA_Achr5T13920_001	UniProt:M0SYC1	PIRSF:PIRSF016021
PANTHER:PTHR31100	PANTHER:PTHR31100:SF21	UniParc:UPI000296F180	SEG:seg	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G13920_001]

Coordinates

chr5:-:10011852..10012742

Molecular Weight (calculated)

23662.4 Da

IEP (calculated)

6.847

GRAVY (calculated)

-0.585

Length

227 amino acids

Sequence
(BLAST)

001: MAGLDLSTAS RYVHHHLPYH HNANSNDEES NNNNNNYSNK RTSGTGGHDQ FGGAAEHDAP SVPKQGGGPG DMAARRPRGR PAGSKNKPKP PVIITRESAN
101: TLQAHILEVG AGCDVFDCIA AYACRRQRGV SLYAAGPVIV IAASFTNVAY ERLPLEEEEP LQMQAPAQQG SGGDGGSGGS GGGSGNPFPD PHSCLPFLNL
201: PLLNMANCQL PMDGHGWAGG ATGRSPF

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.