Factsheet for PGSC0003DMT400002959

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045203	Potato	nucleus	74.72	68.28
VIT_02s0012g00880.t01	Wine grape	cytosol	71.32	67.02
KRH58197	Soybean	cytosol	69.43	66.67
CDX90445	Canola	plastid	67.17	64.96
KRH04340	Soybean	cytosol	60.75	64.14
PGSC0003DMT400004515	Potato	nucleus	53.96	63.84
AT4G17800.1	Thale cress	cytosol	68.68	62.33
Bra012639.1-P	Field mustard	cytosol	67.55	61.51
CDX78802	Canola	cytosol	66.79	60.82
CDY54780	Canola	cytosol	66.79	60.62
Bra040183.1-P	Field mustard	cytosol	66.79	60.41
PGSC0003DMT400045315	Potato	nucleus	47.55	57.01
GSMUA_Achr5P03390_001	Banana	nucleus	52.08	53.28
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	50.19	52.16
GSMUA_Achr5P13920_001	Banana	nucleus	40.75	47.58
PGSC0003DMT400044573	Potato	cytosol	44.15	46.61
PGSC0003DMT400010004	Potato	nucleus	49.81	45.05
PGSC0003DMT400025705	Potato	plastid	44.15	45.0
PGSC0003DMT400033248	Potato	nucleus	50.94	43.83
PGSC0003DMT400073795	Potato	nucleus	49.06	43.77
PGSC0003DMT400044451	Potato	nucleus	45.66	42.46
PGSC0003DMT400032509	Potato	nucleus	49.43	42.12
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	47.17	39.81
PGSC0003DMT400024250	Potato	cytosol, plastid	32.83	32.34
PGSC0003DMT400005182	Potato	nucleus	30.19	29.85

Protein Annotations

EntrezGene:102599260	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M0ZKY2	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400001158	PGSC:PGSC0003DMG400001158	EnsemblPlants:PGSC0003DMT400002959	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF21	SUPFAM:SSF117856	UniParc:UPI000295BA11	RefSeq:XP_006366237.1	SEG:seg

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400001158]

Coordinates

chr8:+:4483529..4485711

Molecular Weight (calculated)

28195.9 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.449

Length

265 amino acids

Sequence
(BLAST)

001: MAGLDLSTTT RYIHQLHHPA DFNLQRQPGD EDNNNQFSDD HHHEDNGHQN QGGDIVGRRP RGRPAGSKNK PKPPVIITRE SANTLRAHIL EIGNGCDVFE
101: CVSTYARRRQ RGICILSGSG TVTNVSIRQP AAAGSVVTLH GRFEILSLSG SFLPPPAPPG ATSLTIFVAG GQGQVVGGSV VGELIASGPV IVIASSFTNV
201: AYERLPLEED EGGGGLQIQP QVSNSGNNNN NNNNNNSQFP HDPSSGFPFF NLPLNMPNGQ LPFGV

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.