Factsheet for PGSC0003DMT400010004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079720.2.1	Tomato	nucleus	96.25	96.58
PGSC0003DMT400045315	Potato	nucleus	64.16	85.07
PGSC0003DMT400032509	Potato	nucleus	81.91	77.17
VIT_02s0025g05100.t01	Wine grape	nucleus	77.13	74.83
KRH77431	Soybean	nucleus	70.99	69.33
KRH57320	Soybean	nucleus	66.89	69.26
KRH28008	Soybean	nucleus	70.31	69.13
KRH04051	Soybean	nucleus	66.89	68.29
PGSC0003DMT400033248	Potato	nucleus	66.21	62.99
TraesCS6D01G167600.1	Wheat	nucleus	59.39	56.31
HORVU6Hr1G037630.1	Barley	nucleus	59.04	55.99
HORVU6Hr1G037640.1	Barley	nucleus	59.04	55.99
TraesCS6B01G209300.1	Wheat	nucleus	58.7	55.66
TraesCS6A01G176200.1	Wheat	nucleus	58.7	55.66
Os02t0448000-00	Rice	nucleus	59.39	55.06
Zm00001d016132_P001	Maize	nucleus	58.02	55.02
EES04848	Sorghum	nucleus	59.04	52.91
Zm00001d053429_P001	Maize	nucleus	56.66	51.88
PGSC0003DMT400044573	Potato	cytosol	44.37	51.79
PGSC0003DMT400025705	Potato	plastid	44.37	50.0
PGSC0003DMT400045203	Potato	nucleus	49.49	50.0
PGSC0003DMT400004515	Potato	nucleus	38.23	50.0
PGSC0003DMT400002959	Potato	nucleus	45.05	49.81
PGSC0003DMT400073795	Potato	nucleus	49.83	49.16
PGSC0003DMT400044451	Potato	nucleus	47.44	48.77
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	42.32	39.49
PGSC0003DMT400024250	Potato	cytosol, plastid	32.42	35.32
PGSC0003DMT400005182	Potato	nucleus	27.65	30.22

Protein Annotations

EntrezGene:102601354	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M0ZXB0	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400003920	PGSC:PGSC0003DMG400003920	EnsemblPlants:PGSC0003DMT400010004	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002969D10	RefSeq:XP_006363711.1	SEG:seg

Description

AT-hook DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003920]

Coordinates

chr8:-:53425256..53426623

Molecular Weight (calculated)

31121.6 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.581

Length

293 amino acids

Sequence
(BLAST)

001: MDQMNHSLPP PFHTRDFNLH QFHQNSEDEQ SGTSGLNMSG QKRDRDDNNN NNNENSNGGE SKDGLGNSGE GEMSRRPRGR PSGSKNKPKP PIIITRDSAN
101: ALRTHVMEIA DGCDIMESIS NFARRRQRGV CIMSGTGIVT NVNLRQPASP GAIVTLHGRF EILSLAGSFL PPPAPPTTSG LTIYLAGGQG QVVGGSVVGA
201: LMASGPVVIM SASFSNAAYE RLPLEEDNQN HPLPVVPGGG SLGSPPGNIG GQGGQQQQQM MADPSLFHGM PPNLLNSIQL PSEPYWATGR PPF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.