Factsheet for HORVU6Hr1G037640.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G037630.1	Barley	nucleus	100.0	100.0
TraesCS6D01G167600.1	Wheat	nucleus	98.71	98.71
TraesCS6B01G209300.1	Wheat	nucleus	98.38	98.38
TraesCS6A01G176200.1	Wheat	nucleus	98.38	98.38
Os02t0448000-00	Rice	nucleus	88.67	86.71
Zm00001d016132_P001	Maize	nucleus	82.52	82.52
EES04848	Sorghum	nucleus	86.73	81.96
Zm00001d053429_P001	Maize	nucleus	83.17	80.31
Solyc06g060500.1.1	Tomato	nucleus	46.6	65.45
PGSC0003DMT400045315	Potato	nucleus	46.28	64.71
VIT_02s0025g05100.t01	Wine grape	nucleus	59.22	60.6
KRH57320	Soybean	nucleus	54.69	59.72
Solyc08g079720.2.1	Tomato	nucleus	56.31	59.59
KRH28008	Soybean	nucleus	57.28	59.4
PGSC0003DMT400010004	Potato	nucleus	55.99	59.04
KRH04051	Soybean	nucleus	54.37	58.54
KRH77431	Soybean	nucleus	55.99	57.67
PGSC0003DMT400032509	Potato	nucleus	55.02	54.66
Solyc08g007560.1.1	Tomato	nucleus	55.66	53.92
HORVU7Hr1G070490.2	Barley	cytosol, mitochondrion, peroxisome	49.51	53.12
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	40.13	48.44
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	43.04	47.33
HORVU4Hr1G000870.2	Barley	nucleus	43.37	46.69
HORVU7Hr1G020390.1	Barley	mitochondrion	28.48	46.56
HORVU6Hr1G091740.1	Barley	cytosol	42.72	45.21
HORVU7Hr1G017700.2	Barley	nucleus	50.16	44.41
HORVU4Hr1G015750.1	Barley	mitochondrion	39.48	43.88
HORVU6Hr1G070090.1	Barley	plastid	46.6	43.5
HORVU1Hr1G008650.1	Barley	mitochondrion, nucleus, peroxisome	44.66	42.86
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	42.39	41.46
HORVU3Hr1G033710.2	Barley	plastid	27.18	39.44
HORVU7Hr1G093230.2	Barley	cytosol	32.69	33.33
HORVU0Hr1G011700.1	Barley	cytosol	22.33	31.94
HORVU3Hr1G108820.1	Barley	mitochondrion	24.6	29.69

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EMBL:AK372007	InterPro:AT-hook_nuclear	UniProt:F2E783	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G037640	EnsemblPlants:HORVU6Hr1G037640.1
InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI0002007D4F	SEG:seg	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F2E783]

Coordinates

chrchr6H:+:189695877..189696806

Molecular Weight (calculated)

31774.3 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.359

Length

309 amino acids

Sequence
(BLAST)

001: MDPVTASIHG HHLPPPFNTR DFHHHLQQQQ LHLKSEDDQG GGSPFGGHGT KHGHEDDENS GNGNGSGGEL ALISPSGGGL QDGGENGSRR PRGRPAGSKN
101: KPKPPIIITR DSANTLRTHV MEVAGGCDIS ESITAFARRR QRGVCVLSGA GTVTNVTLRQ PASQGAVVAL HGRFEILSLS GSFLPPPAPP EATGLTVYLA
201: GGKGQVVGGT VVGSLTAAGP VVIMAASFAN AVYERLPLEE DELLAAQGQA DSNGMLLAAG QQASQMAGGD VDPSLFEGLP PNLLGNVQLP PEAGYRWNPG
301: TAGGRPSPF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.