Factsheet for Solyc06g060500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045315	Potato	nucleus	99.09	98.64
Solyc08g079720.2.1	Tomato	nucleus	86.36	65.07
VIT_02s0025g05100.t01	Wine grape	nucleus	81.36	59.27
KRH57320	Soybean	nucleus	75.45	58.66
Solyc08g007560.1.1	Tomato	nucleus	84.55	58.31
KRH04051	Soybean	nucleus	75.45	57.84
KRH77431	Soybean	nucleus	75.0	55.0
KRH28008	Soybean	nucleus	74.09	54.7
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	58.18	51.0
Solyc01g091470.2.1	Tomato	nucleus	69.55	50.66
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	55.91	50.2
Solyc01g080960.2.1	Tomato	nucleus	58.18	48.3
HORVU6Hr1G037630.1	Barley	nucleus	65.45	46.6
TraesCS6B01G209300.1	Wheat	nucleus	65.45	46.6
HORVU6Hr1G037640.1	Barley	nucleus	65.45	46.6
Zm00001d016132_P001	Maize	nucleus	65.0	46.28
TraesCS6D01G167600.1	Wheat	nucleus	65.0	46.28
TraesCS6A01G176200.1	Wheat	nucleus	65.0	46.28
Os02t0448000-00	Rice	nucleus	65.45	45.57
Solyc11g006090.1.1	Tomato	nucleus	52.73	45.49
Solyc08g077010.1.1	Tomato	cytosol	59.09	45.14
Solyc09g089620.1.1	Tomato	nucleus	57.73	44.41
Zm00001d053429_P001	Maize	nucleus	64.55	44.38
EES04848	Sorghum	nucleus	65.91	44.34
Solyc05g053000.1.1	Tomato	nucleus	50.45	35.46
Solyc12g087950.1.1	Tomato	nucleus	36.36	30.08
Solyc04g076220.2.1	Tomato	nucleus	42.27	27.68

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4C6N0	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc06g060500.1
EnsemblPlants:Solyc06g060500.1.1	UniParc:UPI000276636E	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4C6N0]

Coordinates

chr6:-:38525764..38526426

Molecular Weight (calculated)

23128.6 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.322

Length

220 amino acids

Sequence
(BLAST)

001: MDDEGEMSRR PRGRPAGSKN KPKPPIIINR DSANALRTHI IEIADGCDVM ESVSNFSRRR QRGVCIMSGT GNVTNVNLKQ PASSGEIVTL HGRFEILSLS
101: GSFLPPPAPP AASGLTIYLA GGQGQVVGGS VVGALMASGP VVIMAASFSN AAYERLPLEE DDQNHPLPMP GGPLGSPGGQ QQQLLGGDPS MFHGTPPPNL
201: LNSSMQLPHE GYWSTGRPPF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.