Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G167600.1 | Wheat | nucleus | 98.71 | 98.71 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 98.38 | 98.38 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 98.38 | 98.38 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 98.38 | 98.38 |
| Os02t0448000-00 | Rice | nucleus | 88.35 | 86.39 |
| Zm00001d016132_P001 | Maize | nucleus | 82.85 | 82.85 |
| EES04848 | Sorghum | nucleus | 87.06 | 82.26 |
| Zm00001d053429_P001 | Maize | nucleus | 83.17 | 80.31 |
| Solyc06g060500.1.1 | Tomato | nucleus | 46.28 | 65.0 |
| PGSC0003DMT400045315 | Potato | nucleus | 45.95 | 64.25 |
| VIT_02s0025g05100.t01 | Wine grape | nucleus | 58.9 | 60.26 |
| KRH57320 | Soybean | nucleus | 54.37 | 59.36 |
| Solyc08g079720.2.1 | Tomato | nucleus | 55.99 | 59.25 |
| KRH28008 | Soybean | nucleus | 56.96 | 59.06 |
| PGSC0003DMT400010004 | Potato | nucleus | 55.66 | 58.7 |
| KRH04051 | Soybean | nucleus | 54.05 | 58.19 |
| KRH77431 | Soybean | nucleus | 55.66 | 57.33 |
| PGSC0003DMT400032509 | Potato | nucleus | 54.69 | 54.34 |
| Solyc08g007560.1.1 | Tomato | nucleus | 55.34 | 53.6 |
| TraesCS7A01G299100.1 | Wheat | cytosol, nucleus, plastid | 49.19 | 53.52 |
| TraesCS2A01G449300.1 | Wheat | cytosol, nucleus, peroxisome | 49.84 | 48.89 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 39.81 | 48.05 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 43.04 | 47.16 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 43.37 | 47.02 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 41.75 | 44.48 |
| TraesCS6A01G277700.1 | Wheat | plastid | 46.6 | 44.04 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 48.87 | 43.64 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 49.19 | 43.18 |
| TraesCS1A01G043100.1 | Wheat | mitochondrion, nucleus | 43.04 | 41.05 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 42.39 | 40.56 |
| TraesCS3A01G167300.1 | Wheat | plastid | 26.86 | 38.97 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 33.33 | 35.64 |
| TraesCS3A01G490800.1 | Wheat | cytosol | 27.83 | 30.5 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 31.07 | 28.24 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G176200.1 | EnsemblPlantsGene:TraesCS6A01G176200 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF15 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:192829915..192830844
Molecular Weight (calculated)
31742.3 Da
IEP (calculated)
6.573
GRAVY (calculated)
-0.350
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVTASIHG HHLPPPFNTR DFHHHLQQQQ LHLKSEDDHG GGSPFGGHGT KHGHEDDENS GNGNGSGGEL ALISPSGGGL QDGGENGSRR PRGRPAGSKN
101: KPKPPIIITR DSANTLRTHV MEVAGGCDIS ESITAFARRR QRGVCVLSGA GTVTNLTLRQ PASQGAVVAL HGRFEILSLS GSFLPPPAPP EATGLTVYLA
201: GGKGQVVGGT VVGSLTAAGP VVIMAASFAN AVYERLPLEE DELLAAQGQA DSAGMLAAGQ QASQMAGGDV DPSLFEGLPP NLLGNVQLPP EAASYRWNPG
301: TAGGRPSPF
101: KPKPPIIITR DSANTLRTHV MEVAGGCDIS ESITAFARRR QRGVCVLSGA GTVTNLTLRQ PASQGAVVAL HGRFEILSLS GSFLPPPAPP EATGLTVYLA
201: GGKGQVVGGT VVGSLTAAGP VVIMAASFAN AVYERLPLEE DELLAAQGQA DSAGMLAAGQ QASQMAGGDV DPSLFEGLPP NLLGNVQLPP EAASYRWNPG
301: TAGGRPSPF
001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
Arabidopsis Description
AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.