CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016132_P001	Maize	nucleus	88.38	93.53
Zm00001d053429_P001	Maize	nucleus	87.77	89.69
Os02t0448000-00	Rice	nucleus	86.54	89.56
TraesCS6A01G176200.1	Wheat	nucleus	82.26	87.06
TraesCS6D01G167600.1	Wheat	nucleus	81.96	86.73
HORVU6Hr1G037640.1	Barley	nucleus	81.96	86.73
HORVU6Hr1G037630.1	Barley	nucleus	81.96	86.73
TraesCS6B01G209300.1	Wheat	nucleus	81.65	86.41
Solyc06g060500.1.1	Tomato	nucleus	44.34	65.91
PGSC0003DMT400045315	Potato	nucleus	44.04	65.16
VIT_02s0025g05100.t01	Wine grape	nucleus	56.88	61.59
KRH57320	Soybean	nucleus	52.6	60.78
Solyc08g079720.2.1	Tomato	nucleus	53.52	59.93
KRH04051	Soybean	nucleus	52.29	59.58
KRH28008	Soybean	nucleus	54.13	59.4
PGSC0003DMT400010004	Potato	nucleus	52.91	59.04
KRH77431	Soybean	nucleus	54.13	59.0
PGSC0003DMT400032509	Potato	nucleus	52.29	54.98
Solyc08g007560.1.1	Tomato	nucleus	52.91	54.23
KXG24494	Sorghum	nucleus	48.62	53.36
EES12751	Sorghum	cytosol, nucleus, peroxisome	49.54	51.92
KXG25365	Sorghum	nucleus	42.81	51.85
EER95114	Sorghum	nucleus	36.7	44.12
OQU85972	Sorghum	cytosol	40.06	44.11
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	44.04	43.9
EER89149	Sorghum	cytosol, nucleus, plastid	46.18	43.27
EER88668	Sorghum	cytosol	34.25	41.48
KXG19929	Sorghum	nucleus	39.45	40.57
EER99980	Sorghum	plastid	24.16	37.44
OQU88209	Sorghum	peroxisome	27.52	36.0
KXG25333	Sorghum	cytosol	28.44	27.93
OQU89633	Sorghum	cytosol	28.44	26.27

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8078330	InterPro:AT-hook_nuclear	UniProt:C5XZ37	EnsemblPlants:EES04848
ProteinID:EES04848	ProteinID:EES04848.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	EnsemblPlantsGene:SORBI_3004G110700	SUPFAM:SSF117856	unigene:Sbi.9203	UniParc:UPI0001A8529D
RefSeq:XP_002451872.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:10811044..10812027

Molecular Weight (calculated)

33243.9 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.330

Length

327 amino acids

Sequence
(BLAST)

001: MDPVTASIHG HHLPPPFNTR DFHHHLQQQQ QQQHHQLQLK TEDDHGSGGP GVFGSRGNIK GDHHEHNDEN SGNSNGSGGG GGGGDELALI PTSGGGGPDG
101: GGDGTPRRPR GRPAGSKNKP KPPIIITRDS ANTLRTHVME VAGGCDISES ITAFARRRQR GVCVLSGAGT VTNVTLRQPA SQGAVVALHG RFEILSLSGS
201: FLPPPAPPEA TGLTVYLAGG QGQVVGGSVV GALTAAGPVV IMAASFANAV YERLPLEEDD MLAAQAQADS AGILAGAQQA AQLAAAGAVD PSLFQGLPPN
301: LLGNVQLPPE AAYGWNPGAA GGRPAPF

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.