CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
extracellular 1
peroxisome 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042060_P001	Maize	plastid	77.6	79.18
Os01t0953801-00	Rice	nucleus	67.2	63.4
TraesCS3A01G490800.1	Wheat	cytosol	64.4	57.09
TraesCS3B01G551700.1	Wheat	cytosol	64.4	54.03
TraesCS3D01G496700.1	Wheat	cytosol	64.4	53.67
HORVU3Hr1G108820.1	Barley	mitochondrion	44.4	43.36
EER95114	Sorghum	nucleus	38.0	34.93
KXG25365	Sorghum	nucleus	36.4	33.7
KXG24494	Sorghum	nucleus	38.4	32.21
EER99980	Sorghum	plastid	26.4	31.28
EER88668	Sorghum	cytosol	33.2	30.74
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	39.2	29.88
EES12751	Sorghum	cytosol, nucleus, peroxisome	37.2	29.81
OQU85972	Sorghum	cytosol	34.4	28.96
KXG19929	Sorghum	nucleus	36.0	28.3
EES04848	Sorghum	nucleus	36.0	27.52
KXG25333	Sorghum	cytosol	36.4	27.33
EER89149	Sorghum	cytosol, nucleus, plastid	36.0	25.79
OQU89633	Sorghum	cytosol	34.8	24.58

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8062335	UniProt:A0A1W0W1D1	InterPro:AT-hook_nuclear	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	EnsemblPlants:OQU88209
ProteinID:OQU88209	ProteinID:OQU88209.1	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF9	EnsemblPlantsGene:SORBI_3003G429101	SUPFAM:SSF117856	UniParc:UPI0001A84BB2	RefSeq:XP_002456947.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:73230683..73231435

Molecular Weight (calculated)

25044.1 Da

IEP (calculated)

8.261

GRAVY (calculated)

0.070

Length

250 amino acids

Sequence
(BLAST)

001: MAGEEASGGA GLMEPAPAPA RALMPVTARK PRGRPLGSKN KPKPPVVVTR ESDAAMRPVV LELAAGCDVV SAVAAFARRR RVGVSVLCGR GAVAAVTLRL
101: AAAEDTASAV TLHGRFEVLA LSGTVLPSYS PSLAPAFSVS LAGLGGQVIG GTLAGEMTAA DGVVVVAAVF RTAEVHRLPA AGAEDGDGDG GREEGRQLQV
201: AASGADAAGL GGYGGGGHVG QHAEQLPEMG LWGQQPTPTR GPVHPLQNRF

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.