Factsheet for Zm00001d042060_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88209	Sorghum	peroxisome	79.18	77.6
Os01t0953801-00	Rice	nucleus	64.49	59.62
TraesCS3A01G490800.1	Wheat	cytosol	59.18	51.42
TraesCS3B01G551700.1	Wheat	cytosol	59.18	48.66
TraesCS3D01G496700.1	Wheat	cytosol	59.18	48.33
HORVU3Hr1G108820.1	Barley	mitochondrion	42.86	41.02
Zm00001d039249_P001	Maize	cytosol	22.04	34.84
Zm00001d028577_P001	Maize	nucleus	36.73	32.97
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	37.96	31.96
Zm00001d018508_P001	Maize	cytosol	31.84	31.84
Zm00001d031887_P001	Maize	nucleus	34.69	31.6
Zm00001d036088_P001	Maize	extracellular	35.51	31.07
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	37.55	30.77
Zm00001d049906_P001	Maize	nucleus	33.06	30.57
Zm00001d009031_P001	Maize	mitochondrion, plastid	25.31	30.54
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	35.92	28.48
Zm00001d053429_P001	Maize	nucleus	37.14	28.44
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	31.43	28.41
Zm00001d016132_P001	Maize	nucleus	35.51	28.16
Zm00001d051620_P001	Maize	plastid	36.33	28.08
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	35.51	28.06
Zm00001d045928_P001	Maize	nucleus	34.69	27.78
Zm00001d017825_P001	Maize	plastid	36.73	27.78
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	33.06	27.55
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	37.55	26.98
Zm00001d005923_P001	Maize	nucleus	35.1	25.0
Zm00001d020768_P001	Maize	cytosol	33.88	24.92

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.2	UniProt:A0A1D6N0T9	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	ProteinID:ONM34401.1	PFAM:PF03479
PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF9	SUPFAM:SSF117856
UniParc:UPI0004DE89F3	EnsemblPlantsGene:Zm00001d042060	EnsemblPlants:Zm00001d042060_P001	EnsemblPlants:Zm00001d042060_T001	SEG:seg	:

Description

AT-hook motif nuclear-localized protein 17

Coordinates

chr3:-:149256346..149257083

Molecular Weight (calculated)

24232.1 Da

IEP (calculated)

10.460

GRAVY (calculated)

0.167

Length

245 amino acids

Sequence
(BLAST)

001: MAGEKTASSG ATDLVDPATA TATAQKKPRG RPLGSKNKPK PPVVVTRESE AAMRPVVLEL AAGCDVVGAV AAFARRRRVG VSVLCGRGAV AAVTLRLAAS
101: SAAVTLHGRF EVLALSGTVV PSSSSASASA PAFSVSLAGE GGQVIGGTLA GEMTAADGVV VVAAVFGSAQ VHRLPAAGAE DEDSGGGREE GMRAQVAVGL
201: GGTGTGGGLV VVGRQHAQQL PEVGLWGQQP TPAHVRGPVH ALPRF

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.