Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005726_P001 | |
| Zm00001d020409_P002 | |
| Zm00001d032009_P001 | |
| Zm00001d050365_P006 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 88.98 | 81.95 |
| OQU85972 | Sorghum | cytosol | 94.69 | 78.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 49.39 | 72.46 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 83.27 | 70.34 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 83.27 | 70.34 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 67.35 | 70.21 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 82.86 | 69.52 |
| GSMUA_Achr11P... | Banana | cytosol | 48.57 | 69.19 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 82.45 | 68.94 |
| Zm00001d049906_P001 | Maize | nucleus | 68.98 | 63.77 |
| Zm00001d031887_P001 | Maize | nucleus | 69.39 | 63.2 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 66.94 | 63.08 |
| KRH31728 | Soybean | cytosol | 68.57 | 62.22 |
| KRG90376 | Soybean | nucleus | 67.35 | 61.57 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 65.71 | 59.63 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 68.16 | 57.59 |
| Solyc09g089620.1.1 | Tomato | nucleus | 66.53 | 56.99 |
| PGSC0003DMT400044451 | Potato | nucleus | 65.71 | 56.49 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 66.12 | 53.47 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 60.82 | 53.41 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 61.22 | 53.38 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 60.41 | 52.48 |
| Zm00001d028577_P001 | Maize | nucleus | 52.65 | 47.25 |
| Zm00001d024537_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 50.2 | 42.27 |
| Zm00001d002495_P001 | Maize | cytosol, nucleus, peroxisome | 52.65 | 41.75 |
| Zm00001d016132_P001 | Maize | nucleus | 52.65 | 41.75 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 45.71 | 41.33 |
| Zm00001d026035_P001 | Maize | cytosol, nucleus, peroxisome | 52.24 | 41.29 |
| Zm00001d053429_P001 | Maize | nucleus | 52.65 | 40.31 |
| Zm00001d049521_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 48.98 | 40.13 |
| Zm00001d051620_P001 | Maize | plastid | 51.84 | 40.06 |
| Zm00001d017825_P001 | Maize | plastid | 52.65 | 39.81 |
| Zm00001d039249_P001 | Maize | cytosol | 24.49 | 38.71 |
| Zm00001d036088_P001 | Maize | extracellular | 43.27 | 37.86 |
| Zm00001d045928_P001 | Maize | nucleus | 46.53 | 37.25 |
| Zm00001d009031_P001 | Maize | mitochondrion, plastid | 29.8 | 35.96 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 48.98 | 35.19 |
| Zm00001d042060_P001 | Maize | plastid | 31.84 | 31.84 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 37.55 | 31.29 |
| Zm00001d020768_P001 | Maize | cytosol | 38.37 | 28.23 |
| Zm00001d005923_P001 | Maize | nucleus | 38.78 | 27.62 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A1D6HPU2 | ProteinID:AQK76292.1 | InterPro:AT-hook_nuclear | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | PFAM:PF03479 |
| PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | SUPFAM:SSF117856 |
| UniParc:UPI000222091D | EnsemblPlantsGene:Zm00001d018508 | EnsemblPlants:Zm00001d018508_P001 | EnsemblPlants:Zm00001d018508_T001 | SEG:seg | : |
Description
DNA-binding protein
Coordinates
chr5:+:222085925..222086662
Molecular Weight (calculated)
24579.2 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.148
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDPEPSSPA VGAPGDHGAD ETNESGGAVV AAPSRRPRGR PPGSKNKPKP PIFVTRDSPN ALRSHVMEVA GGADVADAIA QFSRRRQRGV CVLSGAGTVA
101: NVALRQPSAP TAVVALRGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGT LIAAGPVMVI ASTFANATYE RLPLEEEDEG PAPPMASGGG
201: ADPLMGGGLG IADPSALPMF NLPPSNGQLG GGDGFPSWAH PRPPY
101: NVALRQPSAP TAVVALRGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGT LIAAGPVMVI ASTFANATYE RLPLEEEDEG PAPPMASGGG
201: ADPLMGGGLG IADPSALPMF NLPPSNGQLG GGDGFPSWAH PRPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.