Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G087520.3 | |
| HORVU5Hr1G060730.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | HORVU4Hr1G087520.3 | AT3G17860.1 | 21798944 |
| AT4G14465.1 | HORVU5Hr1G060730.3 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 97.95 | 98.62 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 98.29 | 97.95 |
| TraesCS6D01G383400.1 | Wheat | cytosol, extracellular, peroxisome | 97.26 | 97.93 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 77.74 | 85.34 |
| Zm00001d018508_P001 | Maize | cytosol | 69.52 | 82.86 |
| OQU85972 | Sorghum | cytosol | 79.79 | 78.45 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.12 | 73.65 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 57.53 | 71.49 |
| GSMUA_Achr11P... | Banana | cytosol | 40.07 | 68.02 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 58.56 | 65.77 |
| KRG90376 | Soybean | nucleus | 59.25 | 64.55 |
| KRH31728 | Soybean | cytosol | 59.25 | 64.07 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 59.25 | 64.07 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 61.3 | 63.7 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 63.01 | 63.45 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 62.33 | 63.41 |
| Solyc09g089620.1.1 | Tomato | nucleus | 60.27 | 61.54 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 63.01 | 60.73 |
| PGSC0003DMT400044451 | Potato | nucleus | 58.9 | 60.35 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 55.48 | 58.06 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 55.82 | 58.01 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 55.14 | 57.09 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 44.52 | 50.78 |
| HORVU7Hr1G020390.1 | Barley | mitochondrion | 31.85 | 49.21 |
| HORVU4Hr1G015750.1 | Barley | mitochondrion | 42.12 | 44.24 |
| HORVU1Hr1G008650.1 | Barley | mitochondrion, nucleus, peroxisome | 48.63 | 44.1 |
| HORVU7Hr1G070490.2 | Barley | cytosol, mitochondrion, peroxisome | 43.49 | 44.1 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 31.85 | 43.06 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 45.21 | 42.72 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 45.21 | 42.72 |
| HORVU6Hr1G070090.1 | Barley | plastid | 46.23 | 40.79 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 43.49 | 40.19 |
| HORVU3Hr1G033710.2 | Barley | plastid | 27.74 | 38.03 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 43.84 | 36.68 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 35.96 | 34.65 |
| HORVU3Hr1G108820.1 | Barley | mitochondrion | 22.95 | 26.17 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G091740.1 | EnsemblPlantsGene:HORVU6Hr1G091740 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF3 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000294876F |
| UniProt:M0XDK6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:576454288..576456171
Molecular Weight (calculated)
29495.9 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.264
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWDGHL GLPGVAPEQP SGSSGPKVES LALVVKDPET SPTSGGGEHA DDNKEGVGGG EPRDLGAVVP APNRRPRGRP PGSKNKPKPP IFVTRDSPNA
101: LRSHVMEVAG GADVCDAIAQ FSRRRQRGVC VLSGAGTVAN VALRQPSAPG GAVVALHGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGS
201: LVAAGPVMVI ASTFANATYE RLPLEDEDEG SGPPMAHDPL MAGGVHGHGH GMPDPSAAMP MFNMPPNNGH LGGVGGGGGD GFPWAPHSRA PY
101: LRSHVMEVAG GADVCDAIAQ FSRRRQRGVC VLSGAGTVAN VALRQPSAPG GAVVALHGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGS
201: LVAAGPVMVI ASTFANATYE RLPLEDEDEG SGPPMAHDPL MAGGVHGHGH GMPDPSAAMP MFNMPPNNGH LGGVGGGGGD GFPWAPHSRA PY
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.