Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G087520.3 | |
| HORVU5Hr1G060730.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | HORVU4Hr1G087520.3 | AT3G17860.1 | 21798944 |
| AT4G14465.1 | HORVU5Hr1G060730.3 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G000870.2 | Barley | nucleus | 92.88 | 90.94 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 90.75 | 90.43 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 90.04 | 89.72 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 89.32 | 89.01 |
| Os08t0563200-01 | Rice | cytosol | 62.28 | 74.47 |
| Zm00001d031887_P001 | Maize | nucleus | 69.39 | 72.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.06 | 72.46 |
| KXG25365 | Sorghum | nucleus | 69.04 | 71.85 |
| Zm00001d049906_P001 | Maize | nucleus | 66.9 | 70.94 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 56.94 | 68.09 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 52.31 | 68.06 |
| GSMUA_Achr11P... | Banana | cytosol | 40.57 | 66.28 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 57.3 | 61.92 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 41.28 | 61.38 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 63.7 | 61.3 |
| KRG90376 | Soybean | nucleus | 58.36 | 61.19 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 58.72 | 61.11 |
| KRH31728 | Soybean | cytosol | 57.3 | 59.63 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 58.36 | 58.36 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 59.79 | 57.93 |
| Solyc09g089620.1.1 | Tomato | nucleus | 58.72 | 57.69 |
| PGSC0003DMT400044451 | Potato | nucleus | 58.36 | 57.54 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 56.94 | 57.35 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 56.94 | 56.74 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 59.07 | 54.79 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 47.69 | 52.34 |
| HORVU7Hr1G020390.1 | Barley | mitochondrion | 34.16 | 50.79 |
| HORVU1Hr1G008650.1 | Barley | mitochondrion, nucleus, peroxisome | 52.67 | 45.96 |
| HORVU4Hr1G015750.1 | Barley | mitochondrion | 44.48 | 44.96 |
| HORVU7Hr1G070490.2 | Barley | cytosol, mitochondrion, peroxisome | 44.13 | 43.06 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 47.33 | 43.04 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 47.33 | 43.04 |
| HORVU3Hr1G033710.2 | Barley | plastid | 29.89 | 39.44 |
| HORVU6Hr1G070090.1 | Barley | plastid | 46.26 | 39.27 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 44.13 | 39.24 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 46.26 | 37.25 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 38.79 | 35.97 |
| HORVU3Hr1G108820.1 | Barley | mitochondrion | 24.91 | 27.34 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A287TA13 | InterPro:AT-hook_nuclear | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G010470 | EnsemblPlants:HORVU6Hr1G010470.2 | InterPro:IPR005175 |
| PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 |
| SUPFAM:SSF117856 | UniParc:UPI000B467995 | SEG:seg | : | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A287TA13]
Coordinates
chrchr6H:+:18494732..18496588
Molecular Weight (calculated)
28743.0 Da
IEP (calculated)
6.400
GRAVY (calculated)
-0.237
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWDEGR LAEAPAASNQ NQQQLEEAMA MAATKVDGES SHSGGGSGQD EEPKEGAVVM VVPANRRPRG RPAGSKNKPK PPIFVTRDSP NALRSHVMEV
101: AAGADVADSI AHFSRRRQRG VCVLSGAGTV ADVALRQPAA PGAVVALRGR FEILSLAGTF LPGPSPPGST GLTVYLAGGQ GQVVGGSVVG ALTAAGPVMV
201: IASTFANATY ERLPLDDAEE DHQLEAARTH GAPGDGVVPP MMAGDPSTGA MPMYGVPPNL MAPGGGGHAA PEWAAHARPP Y
101: AAGADVADSI AHFSRRRQRG VCVLSGAGTV ADVALRQPAA PGAVVALRGR FEILSLAGTF LPGPSPPGST GLTVYLAGGQ GQVVGGSVVG ALTAAGPVMV
201: IASTFANATY ERLPLDDAEE DHQLEAARTH GAPGDGVVPP MMAGDPSTGA MPMYGVPPNL MAPGGGGHAA PEWAAHARPP Y
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.