Factsheet for VIT_05s0049g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	48.08	74.85
KRH31728	Soybean	cytosol	76.92	74.07
GSMUA_Achr11P...	Banana	cytosol	48.46	73.26
GSMUA_Achr2P04080_001	Banana	cytosol	66.15	73.19
KRG90376	Soybean	nucleus	75.0	72.76
VIT_14s0081g00670.t01	Wine grape	mitochondrion	76.54	68.38
KRH34516	Soybean	cytosol, nucleus, peroxisome	76.15	68.28
Zm00001d018508_P001	Maize	cytosol	63.08	66.94
Os08t0563200-01	Rice	cytosol	60.0	66.38
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	62.69	65.2
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	66.54	65.04
Solyc09g089620.1.1	Tomato	nucleus	71.54	65.03
PGSC0003DMT400044451	Potato	nucleus	71.15	64.91
GSMUA_Achr5P19550_001	Banana	cytosol	66.54	64.07
KRG92293	Soybean	cytosol, mitochondrion, nucleus	74.23	63.7
Zm00001d031887_P001	Maize	nucleus	63.46	61.34
CDY23160	Canola	cytosol, nucleus, vacuole	65.77	61.29
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	66.15	61.21
CDY12779	Canola	cytosol, nucleus, vacuole	66.15	60.99
KXG25365	Sorghum	nucleus	63.08	60.74
Zm00001d049906_P001	Maize	nucleus	61.54	60.38
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	66.15	59.31
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	66.15	59.31
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	66.54	59.04
HORVU6Hr1G091740.1	Barley	cytosol	65.77	58.56
OQU85972	Sorghum	cytosol	66.15	57.91
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	61.92	57.3
TraesCS4A01G312400.1	Wheat	nucleus	62.69	57.19
HORVU4Hr1G000870.2	Barley	nucleus	63.08	57.14
TraesCS4D01G001800.1	Wheat	nucleus	62.31	56.84
TraesCS6B01G072300.1	Wheat	nucleus	61.54	56.74
TraesCS6A01G053800.1	Wheat	nucleus	61.15	56.38
TraesCS6D01G055500.1	Wheat	cytosol	60.77	56.03
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	39.62	54.5
VIT_15s0048g00780.t01	Wine grape	nucleus	57.31	49.67
VIT_02s0012g00880.t01	Wine grape	cytosol	53.85	49.65
VIT_02s0025g05100.t01	Wine grape	nucleus	56.54	48.68
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	45.38	47.97
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	49.23	47.76
VIT_13s0019g02080.t01	Wine grape	nucleus	60.0	47.71
VIT_03s0038g04110.t01	Wine grape	nucleus	51.92	46.71
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.46	39.87
HORVU0Hr1G011700.1	Barley	cytosol	30.38	36.57
VIT_18s0001g07380.t01	Wine grape	nucleus	33.46	35.51

Protein Annotations

EntrezGene:100249531	wikigene:100249531	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ProteinID:CCB48517
ProteinID:CCB48517.1	UniProt:F6H8H4	EMBL:FN595496	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742
GO:GO:0045824	GO:GO:1900425	InterPro:IPR005175	EntrezGene:LOC100249531	wikigene:LOC100249531	PFAM:PF03479
PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF42	SUPFAM:SSF117856
UniParc:UPI0001950F4A	ArrayExpress:VIT_05s0049g00100	EnsemblPlantsGene:VIT_05s0049g00100	EnsemblPlants:VIT_05s0049g00100.t01	unigene:Vvi.15592	RefSeq:XP_002284519
RefSeq:XP_002284519.1	SEG:seg	:	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6H8H4]

Coordinates

chr5:-:7159674..7161058

Molecular Weight (calculated)

26878.6 Da

IEP (calculated)

5.890

GRAVY (calculated)

-0.387

Length

260 amino acids

Sequence
(BLAST)

001: MDPAAVSPML NKRDREISIN DNPGTGDDEE EKDNEGEPTE GAVEVGTRRP RGRPPGSKNK PKPPIFVTRD SPNALRSHVM EVAGGHDVAE SVAQFARRRQ
101: RGVCVLSGSG SVANVTLRQP AAPGAVVALH GRFEILSLTG AFLPGPAPPG STGLTVYLAG GQGQVVGGSV VGSLVAAGPV IVIAATFANA TYERLPLEEE
201: EEGGQAPPPS GSPPAIGSSG GQHHSGLPEL PIYNLPPNLL PNGGQLSHDP YSWAHARPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.