Factsheet for VIT_03s0038g04110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G35390.1	Thale cress	cytosol	61.94	59.87
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	60.9	58.28
CDX69136	Canola	cytosol, nucleus, peroxisome	60.9	58.28
CDX75499	Canola	cytosol, nucleus, peroxisome	60.9	58.28
VIT_05s0049g00100.t01	Wine grape	cytosol	46.71	51.92
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	56.75	51.9
VIT_02s0012g00880.t01	Wine grape	cytosol	49.48	50.71
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	41.52	48.78
VIT_02s0025g05100.t01	Wine grape	nucleus	50.17	48.01
VIT_15s0048g00780.t01	Wine grape	nucleus	49.83	48.0
VIT_14s0081g00670.t01	Wine grape	mitochondrion	47.75	47.42
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	43.6	47.01
VIT_13s0019g02080.t01	Wine grape	nucleus	47.75	42.2
VIT_18s0001g07380.t01	Wine grape	nucleus	29.41	34.69

Protein Annotations

EntrezGene:100245113	wikigene:100245113	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ProteinID:CCB60513
ProteinID:CCB60513.1	UniProt:F6I0P7	EMBL:FN596508	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009938
GO:GO:0009987	GO:GO:0043621	InterPro:IPR005175	EntrezGene:LOC100245113	wikigene:LOC100245113	PFAM:PF03479
PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF16	SUPFAM:SSF117856
UniParc:UPI00015C8DC3	ArrayExpress:VIT_03s0038g04110	EnsemblPlantsGene:VIT_03s0038g04110	EnsemblPlants:VIT_03s0038g04110.t01	unigene:Vvi.20227	RefSeq:XP_002280017
RefSeq:XP_002280017.1	RefSeq:XP_019074697.1	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6I0P7]

Coordinates

chr3:+:2980543..2983436

Molecular Weight (calculated)

29459.5 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.387

Length

289 amino acids

Sequence
(BLAST)

001: MAGMEQGAGS RYIHQLFRPE LQLERTPQQP HQPPQLNDSG DSPENEDRTD PDGSPGAATT SSRRPRGRPP GSKNKAKPPI IITRDSPNAL RSHVLEISAG
101: ADIVESVSNY ARRRGRGVCI LSGGGAVTDV TLRQPAAPSG SVVTLHGRFE ILSLTGTALP PPAPPGAGGL TIYLGGGQGQ VVGGRVVGPL VASGPVLLMA
201: ASFANAVYDR LPLEEEEESP VQVQPTASQS SGVTGGGGQL GDGGNGSTTT AGGGAGAGVP FYNLGPNMGN YPFPGDVFGW NGGATRPPF

Best Arabidopsis Sequence Match ( AT4G35390.1 )
(BLAST)

001: MSSYMHPLLG QELHLQRPED SRTPPDQNNM ELNRSEADEA KAETTPTGGA TSSATASGSS SGRRPRGRPA GSKNKPKPPT IITRDSPNVL RSHVLEVTSG
101: SDISEAVSTY ATRRGCGVCI ISGTGAVTNV TIRQPAAPAG GGVITLHGRF DILSLTGTAL PPPAPPGAGG LTVYLAGGQG QVVGGNVAGS LIASGPVVLM
201: AASFANAVYD RLPIEEEETP PPRTTGVQQQ QPEASQSSEV TGSGAQACES NLQGGNGGGG VAFYNLGMNM NNFQFSGGDI YGMSGGSGGG GGGATRPAF

Arabidopsis Description

AHL25AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.