Factsheet for VIT_15s0048g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g05100.t01	Wine grape	nucleus	78.33	77.81
KRH65251	Soybean	nucleus	74.0	71.61
Solyc01g091470.2.1	Tomato	nucleus	71.67	71.19
KRH76289	Soybean	nucleus	68.33	71.18
PGSC0003DMT400033248	Potato	nucleus	71.67	69.81
AT2G45430.1	Thale cress	nucleus	67.33	63.72
Bra039338.1-P	Field mustard	nucleus	65.0	63.31
CDY18931	Canola	nucleus	65.0	63.11
CDY37040	Canola	nucleus	64.67	62.99
CDY27387	Canola	nucleus	65.33	62.82
Bra004911.1-P	Field mustard	nucleus	64.0	62.34
CDX74739	Canola	nucleus	64.33	62.26
GSMUA_Achr1P19850_001	Banana	nucleus	63.67	62.22
AT3G60870.1	Thale cress	nucleus	53.33	60.38
VIT_05s0049g00100.t01	Wine grape	cytosol	49.67	57.31
VIT_02s0012g00880.t01	Wine grape	cytosol	51.0	54.26
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	47.33	52.99
VIT_14s0081g00670.t01	Wine grape	mitochondrion	51.33	52.92
VIT_03s0038g04110.t01	Wine grape	nucleus	48.0	49.83
GSMUA_Achr3P11300_001	Banana	nucleus	37.33	48.91
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	39.33	47.97
VIT_13s0019g02080.t01	Wine grape	nucleus	46.67	42.81
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	45.0	42.72
VIT_18s0001g07380.t01	Wine grape	nucleus	31.0	37.96

Protein Annotations

EntrezGene:100245513	wikigene:100245513	Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A5BIN6	EMBL:AM460760
InterPro:AT-hook_nuclear	ProteinID:CAN81187	ProteinID:CAN81187.1	ProteinID:CBI38865	ProteinID:CBI38865.3	EMBL:FN596739
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
EntrezGene:LOC100245513	wikigene:LOC100245513	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI000152453F	ArrayExpress:VIT_15s0048g00780	EnsemblPlantsGene:VIT_15s0048g00780
EnsemblPlants:VIT_15s0048g00780.t01	unigene:Vvi.23738	RefSeq:XP_002279636	RefSeq:XP_002279636.1	SEG:seg	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A5BIN6]

Coordinates

chr15:-:14938351..14940716

Molecular Weight (calculated)

31900.6 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.530

Length

300 amino acids

Sequence
(BLAST)

001: MDPVTAHGRP LPPPFHTRDL QLHHHHQYQH HPQANSEDEQ SGSSSLNRAQ KRDRDESNAT NNTSPIDGKE FGTSSGDGEI TRRPRGRPAG SKNKPKPPII
101: ITRDSANALR SHVMEIATGC DIMDSLNTFA RRRQRGICIL SGSGTVTNVT LRQPASPGAV VTLHGRFEIL SLSGSFLPPP APPAASGLTI YLAGGQGQVV
201: GGSVVGPLLA SGPVVIMAAS FGNAAYERLP LEDEEPQVPI PGSGPLGSPG MVGQQPQQQQ QQQQLLPDPN ASLFQGLPPN LLNSCQLPAE AYWGTARPPY

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.