CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18931	Canola	nucleus	98.39	98.71
Bra004911.1-P	Field mustard	nucleus	98.06	98.7
CDY37040	Canola	nucleus	91.61	92.21
CDY27387	Canola	nucleus	91.61	91.03
AT2G45430.1	Thale cress	nucleus	92.26	90.22
KRH76289	Soybean	nucleus	60.32	64.93
VIT_15s0048g00780.t01	Wine grape	nucleus	62.26	64.33
KRH65251	Soybean	nucleus	63.55	63.55
PGSC0003DMT400033248	Potato	nucleus	62.26	62.66
Solyc01g091470.2.1	Tomato	nucleus	60.65	62.25
CDX98771	Canola	nucleus	57.74	56.47
CDX94128	Canola	nucleus	58.71	55.66
GSMUA_Achr1P19850_001	Banana	nucleus	54.52	55.05
CDX82978	Canola	cytosol, nucleus, plastid	55.81	54.92
CDY41289	Canola	nucleus	55.48	54.6
CDY04391	Canola	nucleus	57.1	54.13
CDX90445	Canola	plastid	45.81	51.82
CDX78802	Canola	cytosol	46.77	49.83
CDY54780	Canola	cytosol	46.45	49.32
CDX79599	Canola	cytosol, peroxisome, plastid	42.26	47.99
CDY72485	Canola	nucleus	41.94	47.62
CDY23160	Canola	cytosol, nucleus, vacuole	41.61	46.24
CDY59041	Canola	cytosol, nucleus, peroxisome	42.58	46.15
CDY12779	Canola	cytosol, nucleus, vacuole	41.94	46.1
CDX79838	Canola	plastid	38.39	45.77
CDY53650	Canola	plastid	38.39	45.77
CDY64701	Canola	nucleus	45.16	45.02
CDX87591	Canola	nucleus	40.65	45.0
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	45.48	44.9
CDY20404	Canola	nucleus	39.03	44.65
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	40.97	44.1
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	39.03	43.84
CDY45983	Canola	nucleus	40.65	43.75
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	40.65	43.6
CDY68242	Canola	plastid	41.61	43.43
CDY41211	Canola	plastid	41.29	43.39
CDY70947	Canola	plastid	36.45	43.3
CDX84222	Canola	cytosol	26.77	43.23
CDY14862	Canola	plastid	36.13	42.91
CDX69136	Canola	cytosol, nucleus, peroxisome	41.61	42.72
CDY60321	Canola	plastid	40.65	42.57
CDX96613	Canola	nucleus	41.29	42.52
CDX75499	Canola	cytosol, nucleus, peroxisome	41.29	42.38
CDY53687	Canola	nucleus	40.32	41.95
CDY31677	Canola	cytosol	26.45	41.62
CDY02949	Canola	plastid	40.97	41.37
CDX68095	Canola	cytosol	35.81	41.11
GSMUA_Achr3P11300_001	Banana	nucleus	30.32	41.05
CDX76085	Canola	plastid	40.65	41.04
CDY33658	Canola	nucleus	38.06	40.41
CDX85952	Canola	cytosol	35.16	40.07
CDY45266	Canola	plastid	26.45	40.0
CDY31511	Canola	nucleus	34.52	39.78
CDY01347	Canola	nucleus	34.84	39.71
CDY31858	Canola	nucleus	34.52	39.19
CDY29494	Canola	nucleus	33.87	38.32
CDY21451	Canola	cytosol	29.68	37.55
CDX83182	Canola	cytosol	29.35	37.14
CDY65376	Canola	nucleus	26.13	29.45

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlants:CDX74739	ProteinID:CDX74739	ProteinID:CDX74739.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00116707001
InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF2	SUPFAM:SSF117856	UniParc:UPI0004EDFE9B	SEG:seg	:	:

Description

BnaA05g04850D

Coordinates

chrLK031802:+:402633..403862

Molecular Weight (calculated)

32858.5 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.558

Length

310 amino acids

Sequence
(BLAST)

001: MDQVSRSLPF LSRDLHLHPH HQFQHQQQHN HVHEIDQHRI SGLKRDRDTE IDPNEHSPAG KDQNTPGSGG ESGGGGGGDN QITRRPRGRP AGSKNKPKPP
101: IIVTRDSANA LKSHVMEVAN GCDVMESVTV FARRRQRGVC VLSGNGAVTN VTIRQPATVP GGGSSVVNLH GRFEILSLSG SFLPPPAPPA ASGLTIYLAG
201: GQGQVVGGSV VGPLMASGPV VIMAASFGNA AYERLPLEEE DQEEQQTSGA VVNNNNIDGN GTMGGGTQTQ QQQQLMQDPT SFIQGLQPNL MSSSVQLPGE
301: AYWGTPRPSF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.