Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016444.1-P | Field mustard | nucleus | 99.34 | 94.92 |
| CDY33658 | Canola | nucleus | 91.36 | 94.18 |
| AT1G20900.1 | Thale cress | nucleus | 93.36 | 90.35 |
| CDY31511 | Canola | nucleus | 80.73 | 90.33 |
| CDY29494 | Canola | nucleus | 80.73 | 88.69 |
| CDY01347 | Canola | nucleus | 79.73 | 88.24 |
| CDY31858 | Canola | nucleus | 79.4 | 87.55 |
| CDX87591 | Canola | nucleus | 70.76 | 76.07 |
| CDY20404 | Canola | nucleus | 67.77 | 75.28 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 68.77 | 75.0 |
| CDY45983 | Canola | nucleus | 70.43 | 73.61 |
| CDX68095 | Canola | cytosol | 62.79 | 70.0 |
| CDX85952 | Canola | cytosol | 61.46 | 68.01 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 50.5 | 62.04 |
| KRH51551 | Soybean | plastid | 41.2 | 60.78 |
| PGSC0003DMT400025705 | Potato | plastid | 51.49 | 59.62 |
| Zm00001d051620_P001 | Maize | plastid | 53.82 | 51.1 |
| TraesCS6A01G277700.1 | Wheat | plastid | 55.48 | 51.07 |
| Zm00001d017825_P001 | Maize | plastid | 54.49 | 50.62 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 55.15 | 50.61 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 47.18 | 50.53 |
| TraesCS6B01G306100.1 | Wheat | plastid | 54.82 | 50.15 |
| TraesCS6D01G258400.1 | Wheat | plastid | 54.82 | 50.15 |
| HORVU6Hr1G070090.1 | Barley | plastid | 55.15 | 50.15 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 55.15 | 49.4 |
| Zm00001d045928_P001 | Maize | nucleus | 47.84 | 47.06 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 49.17 | 46.84 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 46.51 | 46.36 |
| KXG19929 | Sorghum | nucleus | 48.51 | 45.91 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 45.85 | 45.7 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 46.84 | 44.62 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 47.84 | 44.58 |
| CDX90445 | Canola | plastid | 40.53 | 44.53 |
| Os06t0326900-01 | Rice | nucleus | 47.51 | 44.41 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 47.18 | 44.1 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 45.85 | 43.4 |
| CDX79838 | Canola | plastid | 37.21 | 43.08 |
| CDY53650 | Canola | plastid | 37.21 | 43.08 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 38.54 | 42.49 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 39.2 | 42.29 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 39.53 | 42.2 |
| CDY72485 | Canola | nucleus | 38.21 | 42.12 |
| CDX78802 | Canola | cytosol | 40.2 | 41.58 |
| CDY18931 | Canola | nucleus | 42.52 | 41.42 |
| CDY70947 | Canola | plastid | 35.88 | 41.38 |
| CDX74739 | Canola | nucleus | 42.52 | 41.29 |
| CDY54780 | Canola | cytosol | 39.87 | 41.1 |
| CDY14862 | Canola | plastid | 35.55 | 41.0 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 38.87 | 40.91 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 36.54 | 40.59 |
| CDY41211 | Canola | plastid | 38.87 | 39.66 |
| EER88668 | Sorghum | cytosol | 35.55 | 39.63 |
| CDY64701 | Canola | nucleus | 40.86 | 39.55 |
| CDY60321 | Canola | plastid | 38.87 | 39.53 |
| CDY68242 | Canola | plastid | 38.87 | 39.39 |
| CDY37040 | Canola | nucleus | 40.2 | 39.29 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 40.86 | 39.17 |
| CDY53687 | Canola | nucleus | 38.54 | 38.93 |
| CDY27387 | Canola | nucleus | 40.2 | 38.78 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 39.87 | 38.1 |
| CDY41289 | Canola | nucleus | 39.87 | 38.1 |
| CDX84222 | Canola | cytosol | 24.25 | 38.02 |
| CDX98771 | Canola | nucleus | 39.87 | 37.85 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 35.88 | 37.5 |
| CDY02949 | Canola | plastid | 37.87 | 37.13 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 35.55 | 37.02 |
| CDX94128 | Canola | nucleus | 40.2 | 37.0 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 35.88 | 36.99 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 34.88 | 36.33 |
| CDX76085 | Canola | plastid | 36.88 | 36.16 |
| CDY04391 | Canola | nucleus | 39.2 | 36.09 |
| CDY31677 | Canola | cytosol | 23.59 | 36.04 |
| CDY21451 | Canola | cytosol | 28.9 | 35.51 |
| CDY45266 | Canola | plastid | 23.92 | 35.12 |
| CDX83182 | Canola | cytosol | 28.57 | 35.1 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 33.89 | 33.66 |
| CDY65376 | Canola | nucleus | 24.92 | 27.27 |
Protein Annotations
| EnsemblPlants:CDX96613 | EnsemblPlantsGene:GSBRNA2T00102815001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF43 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX96613 |
| ProteinID:CDX96613.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EDE815 | MapMan:35.1 | : |
Description
BnaA08g21560D
Coordinates
chrLK031895:-:254826..255761
Molecular Weight (calculated)
31338.5 Da
IEP (calculated)
7.100
GRAVY (calculated)
-0.639
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGASRYF HNLFRPEIHH QQQLQPQGGI NLFDQHHHQQ QQHQQQQEQP SDDSRESDHS NKDHHHQTGR PDSDPATSSS APGKRPRGRP PGSKNKPKAP
101: IIVTRDSPNT LRSHVLEVSP GADIVESLST YARRRGRGVS VLGGNGTVSN VTLRQPVTPG NVVTLHGRFE ILSLTGTVLP PPAPPGAGGL SIFLSGGQGQ
201: VIGGSVVAPL VASAPVILMA ASFSNAVFER LPIEEEEEEE GGGGGGGGGG PPQMQHAPSA SPPSGVTGQG QLGGNVGGYG FPGDPHLLGW GAGTPSRPPF
301: N
101: IIVTRDSPNT LRSHVLEVSP GADIVESLST YARRRGRGVS VLGGNGTVSN VTLRQPVTPG NVVTLHGRFE ILSLTGTVLP PPAPPGAGGL SIFLSGGQGQ
201: VIGGSVVAPL VASAPVILMA ASFSNAVFER LPIEEEEEEE GGGGGGGGGG PPQMQHAPSA SPPSGVTGQG QLGGNVGGYG FPGDPHLLGW GAGTPSRPPF
301: N
001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F
Arabidopsis Description
AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.