Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 97.92 | 98.26 |
| Bra040135.1-P | Field mustard | cytosol, nucleus, peroxisome | 95.85 | 93.9 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 93.77 | 86.03 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 92.04 | 84.71 |
| CDY64701 | Canola | nucleus | 91.0 | 84.57 |
| Solyc11g006090.1.1 | Tomato | nucleus | 55.02 | 62.35 |
| PGSC0003DMT400073795 | Potato | nucleus | 61.25 | 59.6 |
| VIT_14s0081g00670.t01 | Wine grape | mitochondrion | 59.17 | 58.76 |
| KRG92616 | Soybean | nucleus | 55.02 | 57.4 |
| KRH34163 | Soybean | nucleus | 54.67 | 56.43 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 52.25 | 54.12 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 52.6 | 53.9 |
| CDX90445 | Canola | plastid | 42.91 | 45.26 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 42.56 | 45.05 |
| CDY72485 | Canola | nucleus | 42.56 | 45.05 |
| CDX84222 | Canola | cytosol | 29.41 | 44.27 |
| CDX78802 | Canola | cytosol | 44.29 | 43.99 |
| CDY54780 | Canola | cytosol | 44.29 | 43.84 |
| CDX79838 | Canola | plastid | 38.75 | 43.08 |
| CDY53650 | Canola | plastid | 38.75 | 43.08 |
| CDY70947 | Canola | plastid | 38.06 | 42.15 |
| CDY31677 | Canola | cytosol | 28.72 | 42.13 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 41.52 | 41.96 |
| CDY14862 | Canola | plastid | 37.72 | 41.76 |
| CDY37040 | Canola | nucleus | 43.6 | 40.91 |
| CDY18931 | Canola | nucleus | 43.6 | 40.78 |
| CDX76085 | Canola | plastid | 43.25 | 40.72 |
| CDX74739 | Canola | nucleus | 43.6 | 40.65 |
| CDY27387 | Canola | nucleus | 43.6 | 40.38 |
| CDY68242 | Canola | plastid | 41.18 | 40.07 |
| CDY02949 | Canola | plastid | 42.56 | 40.07 |
| CDY41211 | Canola | plastid | 40.83 | 40.0 |
| CDY53687 | Canola | nucleus | 41.18 | 39.93 |
| CDY41289 | Canola | nucleus | 43.25 | 39.68 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 43.25 | 39.68 |
| CDY60321 | Canola | plastid | 40.48 | 39.53 |
| CDY20404 | Canola | nucleus | 37.02 | 39.48 |
| CDX98771 | Canola | nucleus | 43.25 | 39.43 |
| CDY45983 | Canola | nucleus | 38.41 | 38.54 |
| CDX94128 | Canola | nucleus | 43.25 | 38.23 |
| CDX87591 | Canola | nucleus | 37.02 | 38.21 |
| CDY45266 | Canola | plastid | 25.61 | 36.1 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.26 | 35.87 |
| CDY04391 | Canola | nucleus | 40.48 | 35.78 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 37.37 | 35.76 |
| CDX96613 | Canola | nucleus | 37.02 | 35.55 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 37.02 | 35.43 |
| CDY33658 | Canola | nucleus | 35.29 | 34.93 |
| CDY21451 | Canola | cytosol | 29.41 | 34.69 |
| CDX68095 | Canola | cytosol | 32.18 | 34.44 |
| CDX83182 | Canola | cytosol | 29.07 | 34.29 |
| CDY31511 | Canola | nucleus | 31.49 | 33.83 |
| CDY01347 | Canola | nucleus | 31.14 | 33.09 |
| CDX85952 | Canola | cytosol | 31.14 | 33.09 |
| CDY31858 | Canola | nucleus | 30.8 | 32.6 |
| CDY29494 | Canola | nucleus | 30.8 | 32.48 |
| CDY65376 | Canola | nucleus | 26.64 | 28.0 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | UniProt:A0A078GZG4 | InterPro:AT-hook_nuclear | EnsemblPlants:CDY30003 | ProteinID:CDY30003 |
| ProteinID:CDY30003.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00044531001 | InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | SUPFAM:SSF117856 | UniParc:UPI0004EEEA6D | SEG:seg | : |
Description
BnaC01g40050DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZG4]
Coordinates
chrLK032247:+:402886..403833
Molecular Weight (calculated)
29712.9 Da
IEP (calculated)
6.969
GRAVY (calculated)
-0.376
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPWWTGQV NLSSLETTPP SSSQLKTPDL HISMNMAMVS GHNNHHHHHQ EVNTNNNNED DRDNLSGDDR EPREGAVEAP TRRPRGRPAG SKNKPKPPIF
101: IASGTDVIET LATFARRRQR GICILSGNGT VANVTLRQPS VAPVAAAPGG AAVLALQGRF EILSLTGSFL PGPAPPGSTG LTIYLAGGQG QVVGGSVVGA
201: LMAAGPVMLI AATFSNATYE RLPLDEEEAA ERGQLGGVGS PLSSGGGGGH GNQGLPAYNM PGNLASNGGG GGQMSGQEAY GWAQARSGF
101: IASGTDVIET LATFARRRQR GICILSGNGT VANVTLRQPS VAPVAAAPGG AAVLALQGRF EILSLTGSFL PGPAPPGSTG LTIYLAGGQG QVVGGSVVGA
201: LMAAGPVMLI AATFSNATYE RLPLDEEEAA ERGQLGGVGS PLSSGGGGGH GNQGLPAYNM PGNLASNGGG GGQMSGQEAY GWAQARSGF
001: MANPWWTGQV NLSGLETTPP GSSQLKKPDL HISMNMAMDS GHNNHHHHQE VDNNNNDDDR DNLSGDDHEP REGAVEAPTR RPRGRPAGSK NKPKPPIFVT
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF
Arabidopsis Description
AHL19AT-hook motif nuclear-localized protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR17]
SUBAcon: [mitochondrion,peroxisome,cytosol]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.