Factsheet for Bra040135.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	94.58	96.88
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	93.9	95.85
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	93.56	87.62
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	90.51	85.03
Solyc11g006090.1.1	Tomato	nucleus	52.2	60.39
PGSC0003DMT400073795	Potato	nucleus	58.31	57.91
VIT_14s0081g00670.t01	Wine grape	mitochondrion	55.59	56.36
KRG92616	Soybean	nucleus	51.19	54.51
KRH34163	Soybean	nucleus	51.19	53.93
Bra040183.1-P	Field mustard	cytosol	41.02	41.3
Bra004732.1-P	Field mustard	plastid	35.59	40.23
Bra012639.1-P	Field mustard	cytosol	39.66	40.21
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	38.31	39.51
Bra000281.1-P	Field mustard	plastid	34.92	39.46
Bra016853.1-P	Field mustard	plastid	34.92	39.46
Bra005355.1-P	Field mustard	cytosol	37.97	39.44
Bra004911.1-P	Field mustard	nucleus	41.02	39.29
Bra014735.1-P	Field mustard	plastid	40.68	39.09
Bra039338.1-P	Field mustard	nucleus	40.68	38.96
Bra003217.1-P	Field mustard	nucleus	38.98	38.59
Bra007176.1-P	Field mustard	plastid	38.31	38.05
Bra008262.1-P	Field mustard	nucleus	36.95	37.98
Bra003717.1-P	Field mustard	nucleus	35.93	36.93
Bra015738.1-P	Field mustard	nucleus	35.93	36.81
Bra019355.1-P	Field mustard	nucleus	40.34	36.39
Bra013649.1-P	Field mustard	nucleus	39.66	35.89
Bra012256.1-P	Field mustard	nucleus	36.61	34.95
Bra016444.1-P	Field mustard	nucleus	37.29	34.92
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	39.66	34.51
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	34.24	33.44
Bra026211.1-P	Field mustard	plastid	23.05	33.17
Bra000593.1-P	Field mustard	cytosol	28.47	31.94
Bra025854.1-P	Field mustard	nucleus	30.85	31.82

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra040135	EnsemblPlants:Bra040135.1	EnsemblPlants:Bra040135.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4FGA7	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF3	SUPFAM:SSF117856	UniParc:UPI0002544EAE	SEG:seg	:	:

Description

AT3G04570 (E=9e-051) | DNA-binding protein-related

Coordinates

chrA01:-:28432687..28433651

Molecular Weight (calculated)

29949.0 Da

IEP (calculated)

5.774

GRAVY (calculated)

-0.328

Length

295 amino acids

Sequence
(BLAST)

001: MANPWWTGQV NLSGLETTPP SSSQLKTPDL HISMNMAMDS GHNNHHHHHQ EVNTNNNNED DRDNLSGDDH EPREGAVEAP TRRPRGRPAG SNILLIASGT
101: DVIETLATFA RRRQRGICIL SGNGTVANVT LRQPSVAPVA AAPGGAAVLA LQGRFEILSL TGSFLPGPAP PGSTGLTIYL AGGQGQVVGG SVVGPLMAAG
201: PVMLIAATFS NATYERLPLD EEEAAERGGG GSDGGVVPGQ LGGVGSPLSS GGGGGHGNQG LPAYNMPGNL ASNGGGGGQM SGQEAYGWAQ ARSGF

Best Arabidopsis Sequence Match ( AT3G04570.1 )
(BLAST)

001: MANPWWTGQV NLSGLETTPP GSSQLKKPDL HISMNMAMDS GHNNHHHHQE VDNNNNDDDR DNLSGDDHEP REGAVEAPTR RPRGRPAGSK NKPKPPIFVT
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF

Arabidopsis Description

AHL19AT-hook motif nuclear-localized protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR17]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.