Factsheet for Bra016853.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010725.1-P
Bra018126.1-P
Bra024327.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42940.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G42940.1	Bra010725.1-P	AT4G38800.1	21798944
AT2G42940.1	Bra024327.1-P	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70947	Canola	plastid	100.0	100.0
AT2G42940.1	Thale cress	plastid	86.97	88.33
Bra004732.1-P	Field mustard	plastid	85.82	85.82
Bra000281.1-P	Field mustard	plastid	84.29	84.29
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	60.54	63.71
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	60.15	63.05
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	63.22	61.57
PGSC0003DMT400044573	Potato	cytosol	56.7	58.96
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	56.32	58.57
Bra005355.1-P	Field mustard	cytosol	45.98	42.25
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	44.44	40.56
Bra003217.1-P	Field mustard	nucleus	43.3	37.92
Bra015738.1-P	Field mustard	nucleus	41.38	37.5
Bra003717.1-P	Field mustard	nucleus	41.0	37.28
Bra039338.1-P	Field mustard	nucleus	43.68	37.01
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	44.44	36.94
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	42.53	36.76
Bra007176.1-P	Field mustard	plastid	41.76	36.7
Bra008262.1-P	Field mustard	nucleus	40.23	36.59
Bra004911.1-P	Field mustard	nucleus	42.91	36.36
Bra040183.1-P	Field mustard	cytosol	40.61	36.18
Bra012639.1-P	Field mustard	cytosol	39.46	35.4
Bra012256.1-P	Field mustard	nucleus	41.38	34.95
Bra016444.1-P	Field mustard	nucleus	42.15	34.92
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	39.46	34.92
Bra014735.1-P	Field mustard	plastid	41.0	34.85
Bra026211.1-P	Field mustard	plastid	27.2	34.63
Bra019355.1-P	Field mustard	nucleus	42.53	33.95
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	44.06	33.92
Bra025854.1-P	Field mustard	nucleus	36.4	33.22
Bra013649.1-P	Field mustard	nucleus	41.38	33.13
Bra000593.1-P	Field mustard	cytosol	30.27	30.04

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra016853	EnsemblPlants:Bra016853.1	EnsemblPlants:Bra016853.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4DK25	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF17	SUPFAM:SSF117856	UniParc:UPI0002543ABA	SEG:seg	:	:

Description

AT2G42940 (E=4e-104) | DNA-binding family protein

Coordinates

chrA04:-:17903238..17904023

Molecular Weight (calculated)

27676.1 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.408

Length

261 amino acids

Sequence
(BLAST)

001: MAGGTALNST SVGSKSVPMR NHEATERGNN KNNNNNKNLK ALPKPVQPAS SMKGEMAKRP RGRPAGSKNK PKPPIIVTQD SPNSLRAHAL EISSGNDICE
101: TLSDFARRKQ RGICILSANG CVTNVTLRQP ASSGAIVRLH GRFEILSLLD SILPPPSPVG ITGLTIYLAG PQGQVGGGGV VGGLIASGPV VLMVASFMNA
201: VFDSLPLDDD EAASMQNQQY YHNGRSHPLD DIQRLPQNLL TNGHSDSDIY WGPAQRAMSK P

Best Arabidopsis Sequence Match ( AT2G42940.1 )
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Arabidopsis Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.