Factsheet for Bra003217.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53687	Canola	nucleus	98.66	98.66
CDY60321	Canola	plastid	97.32	97.97
Bra007176.1-P	Field mustard	plastid	88.93	89.23
AT3G55560.1	Thale cress	plastid	90.94	87.42
Bra014735.1-P	Field mustard	plastid	87.58	85.02
KRH15076	Soybean	nucleus	32.89	56.32
KRH73062	Soybean	cytosol	42.95	55.9
KRH31005	Soybean	nucleus	51.68	53.29
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	46.31	52.67
KRG97871	Soybean	nucleus	52.01	51.32
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	43.96	51.17
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	43.62	50.78
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	43.62	50.78
Os03t0270000-01	Rice	nucleus	43.96	50.78
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	43.29	50.39
VIT_13s0019g02080.t01	Wine grape	nucleus	54.03	49.24
GSMUA_Achr11P...	Banana	nucleus	46.64	47.28
EER95114	Sorghum	nucleus	42.95	47.06
Zm00001d028577_P001	Maize	nucleus	42.62	46.52
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	48.66	46.18
GSMUA_Achr7P10630_001	Banana	plastid	44.3	45.36
Solyc05g053000.1.1	Tomato	nucleus	46.98	44.73
Bra016853.1-P	Field mustard	plastid	37.92	43.3
Bra004732.1-P	Field mustard	plastid	37.25	42.53
GSMUA_Achr6P01060_001	Banana	nucleus	39.93	42.5
Bra015738.1-P	Field mustard	nucleus	40.94	42.36
Bra003717.1-P	Field mustard	nucleus	40.6	42.16
Bra000281.1-P	Field mustard	plastid	36.91	42.15
GSMUA_Achr7P15000_001	Banana	nucleus	39.26	41.94
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	40.27	41.81
GSMUA_Achr9P28280_001	Banana	plastid	41.95	41.67
Bra026211.1-P	Field mustard	plastid	28.52	41.46
Bra004911.1-P	Field mustard	nucleus	42.28	40.91
Bra008262.1-P	Field mustard	nucleus	39.26	40.77
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	42.95	40.76
Bra040183.1-P	Field mustard	cytosol	39.6	40.27
Bra012639.1-P	Field mustard	cytosol	39.26	40.21
Bra039338.1-P	Field mustard	nucleus	41.28	39.94
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	38.59	38.98
Bra012256.1-P	Field mustard	nucleus	40.27	38.84
Bra016444.1-P	Field mustard	nucleus	40.6	38.41
Bra000593.1-P	Field mustard	cytosol	33.89	38.4
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	36.58	38.11
Bra005355.1-P	Field mustard	cytosol	36.24	38.03
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	36.91	36.42
Bra025854.1-P	Field mustard	nucleus	34.9	36.36
Bra013649.1-P	Field mustard	nucleus	37.92	34.66
Bra019355.1-P	Field mustard	nucleus	37.58	34.25
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	35.57	31.27

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra003217	EnsemblPlants:Bra003217.1	EnsemblPlants:Bra003217.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4CG84	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF13	SUPFAM:SSF117856	UniParc:UPI00025414B6	SEG:seg	:	:

Description

AT3G55560 (E=2e-101) AGF2 | AGF2 (AT-hook protein of GA feedback 2)

Coordinates

chrA07:-:11943288..11944184

Molecular Weight (calculated)

31367.4 Da

IEP (calculated)

5.844

GRAVY (calculated)

-0.535

Length

298 amino acids

Sequence
(BLAST)

001: MANPWWVGNV AIEGVESPVT SSAPSLHHRS SNNPNMTRSD PRLDHDFTNN SGSPNTHTQN SQEEQDELPA VEHGSGSGST GRRPRGRPPG SKNKPKNPVV
101: VTKESPNSLQ SHVLEIATGA DVAESLNAFA RRRGRGVSVL SGSGLVTNVT LRQPAASGGV VSLRGQFEIL SMCGAFLPTS GSPAAAAGLT IYLAGAQGQV
201: LGGGVAGPLI ASGPVIVIAA TFCNASFERL PIEDEQQQPQ VEEAKEKEND DNKSGNDGTE ESMQPMYNMT PNFMPNGHQM AQHDVFWGAP PARAPPSY

Best Arabidopsis Sequence Match ( AT3G55560.1 )
(BLAST)

001: MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY

Arabidopsis Description

AHL15AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VH84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.