Factsheet for Bra040184.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	99.36	99.36
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	92.99	92.7
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	85.03	90.51
Solyc11g006090.1.1	Tomato	nucleus	55.73	68.63
PGSC0003DMT400073795	Potato	nucleus	60.83	64.31
VIT_14s0081g00670.t01	Wine grape	mitochondrion	58.92	63.57
KRG92616	Soybean	nucleus	54.46	61.73
KRH34163	Soybean	nucleus	54.78	61.43
Bra004911.1-P	Field mustard	nucleus	45.22	46.1
Bra004732.1-P	Field mustard	plastid	37.58	45.21
Bra040183.1-P	Field mustard	cytosol	42.04	45.05
Bra039338.1-P	Field mustard	nucleus	43.95	44.81
Bra005355.1-P	Field mustard	cytosol	40.45	44.72
Bra016853.1-P	Field mustard	plastid	36.94	44.44
Bra008262.1-P	Field mustard	nucleus	40.45	44.25
Bra000281.1-P	Field mustard	plastid	36.62	44.06
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	40.13	44.06
Bra012639.1-P	Field mustard	cytosol	40.76	43.99
Bra007176.1-P	Field mustard	plastid	41.08	43.43
Bra015738.1-P	Field mustard	nucleus	39.81	43.4
Bra003717.1-P	Field mustard	nucleus	39.49	43.21
Bra003217.1-P	Field mustard	nucleus	40.76	42.95
Bra014735.1-P	Field mustard	plastid	41.4	42.35
Bra019355.1-P	Field mustard	nucleus	42.68	40.98
Bra012256.1-P	Field mustard	nucleus	40.13	40.78
Bra013649.1-P	Field mustard	nucleus	42.04	40.49
Bra016444.1-P	Field mustard	nucleus	40.45	40.32
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	42.04	38.94
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	37.26	38.74
Bra026211.1-P	Field mustard	plastid	25.16	38.54
Bra025854.1-P	Field mustard	nucleus	35.03	38.46
Bra000593.1-P	Field mustard	cytosol	30.89	36.88

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra040184	EnsemblPlants:Bra040184.1	EnsemblPlants:Bra040184.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4FGF6	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF3	SUPFAM:SSF117856	UniParc:UPI000253EB93	SEG:seg	:	:

Description

AT3G04570 (E=3e-103) | DNA-binding protein-related

Coordinates

chrScaffold000191:-:4073..5017

Molecular Weight (calculated)

32281.8 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.407

Length

314 amino acids

Sequence
(BLAST)

001: MANPWWTGQV NLSGLEATPP SSSQLKKPDL HISMNMAMDS DHNNHHHHQE VDTNNNNNED DRDNLSGDDH EPREGAVEAP TRRPRGRPAG SKNKPKPPIF
101: VTRDSPNALK SHVMEIASGT DVIETLATFA RRRQRGICIL SGNGTVANVT LRQPSAATVP VPPGGAAVLA LQGRFEILSL TGSFLPGPAP PGSTGLTIYL
201: ASGQGQIVGG SVVGPLMAAG PVMLIAATFS NATYERLPLD EEEAAEGGGG GVVPGQLGGV GSPLSSGGGR GDGNQGLPVY SMPENLVSSG GGSGGGGQMS
301: GQEAYGWAQA RSGF

Best Arabidopsis Sequence Match ( AT3G04570.1 )
(BLAST)

001: MANPWWTGQV NLSGLETTPP GSSQLKKPDL HISMNMAMDS GHNNHHHHQE VDNNNNDDDR DNLSGDDHEP REGAVEAPTR RPRGRPAGSK NKPKPPIFVT
101: RDSPNALKSH VMEIASGTDV IETLATFARR RQRGICILSG NGTVANVTLR QPSTAAVAAA PGGAAVLALQ GRFEILSLTG SFLPGPAPPG STGLTIYLAG
201: GQGQVVGGSV VGPLMAAGPV MLIAATFSNA TYERLPLEEE EAAERGGGGG SGGVVPGQLG GGGSPLSSGA GGGDGNQGLP VYNMPGNLVS NGGSGGGGQM
301: SGQEAYGWAQ ARSGF

Arabidopsis Description

AHL19AT-hook motif nuclear-localized protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR17]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.