Factsheet for Bra017324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59041	Canola	cytosol, nucleus, peroxisome	100.0	100.0
AT2G35270.1	Thale cress	nucleus	92.66	92.98
Bra005355.1-P	Field mustard	cytosol	88.46	89.08
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	87.06	73.45
Bra040183.1-P	Field mustard	cytosol	64.69	63.14
Bra012639.1-P	Field mustard	cytosol	63.64	62.54
GSMUA_Achr8P14790_001	Banana	plastid	58.04	59.5
Bra000281.1-P	Field mustard	plastid	42.66	46.74
Bra004732.1-P	Field mustard	plastid	41.96	45.98
Bra016853.1-P	Field mustard	plastid	40.56	44.44
Bra039338.1-P	Field mustard	nucleus	46.85	43.51
Bra004911.1-P	Field mustard	nucleus	46.5	43.18
Bra019355.1-P	Field mustard	nucleus	48.6	42.51
Bra013649.1-P	Field mustard	nucleus	47.55	41.72
Bra026211.1-P	Field mustard	plastid	29.72	41.46
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	43.71	41.39
Bra015738.1-P	Field mustard	nucleus	41.61	41.32
Bra008262.1-P	Field mustard	nucleus	41.26	41.12
Bra003717.1-P	Field mustard	nucleus	41.26	41.12
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	44.06	40.13
Bra012256.1-P	Field mustard	nucleus	41.61	38.51
Bra016444.1-P	Field mustard	nucleus	42.31	38.41
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	39.51	38.31
Bra000593.1-P	Field mustard	cytosol	34.27	37.26
Bra007176.1-P	Field mustard	plastid	38.11	36.7
Bra003217.1-P	Field mustard	nucleus	38.11	36.58
Bra025854.1-P	Field mustard	nucleus	36.01	36.01
Bra014735.1-P	Field mustard	plastid	37.76	35.18

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra017324	EnsemblPlants:Bra017324.1	EnsemblPlants:Bra017324.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4DLE3	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF14	SUPFAM:SSF117856	UniParc:UPI0002543C76	SEG:seg	:	:

Description

AT2G35270 (E=3e-100) | DNA-binding protein-related

Coordinates

chrA04:+:15373243..15374103

Molecular Weight (calculated)

29306.4 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.267

Length

286 amino acids

Sequence
(BLAST)

001: MSGLNMGTTS RYVHNVDGGG AGQFSTDNHH EDDGGAGENH HHNLHNHHQG LDLIASNDNS GLGGAGGGGE GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGSVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELVAAGPV MVMAASFTNV AYERLPLDEH EEHLQVQSGG GGGGNMYSEA NGGGGGLPFF NLPMSLPHMG VENWQGNSAG AGRAPF

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.