Factsheet for Bra039338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37040	Canola	nucleus	99.68	99.68
CDY27387	Canola	nucleus	99.03	97.76
AT2G45430.1	Thale cress	nucleus	96.75	94.01
Bra004911.1-P	Field mustard	nucleus	90.58	90.58
VIT_15s0048g00780.t01	Wine grape	nucleus	63.31	65.0
KRH76289	Soybean	nucleus	60.39	64.58
KRH65251	Soybean	nucleus	64.94	64.52
PGSC0003DMT400033248	Potato	nucleus	62.34	62.34
Solyc01g091470.2.1	Tomato	nucleus	61.04	62.25
Bra019355.1-P	Field mustard	nucleus	59.74	56.27
GSMUA_Achr1P19850_001	Banana	nucleus	54.87	55.05
Bra013649.1-P	Field mustard	nucleus	57.14	53.99
Bra012639.1-P	Field mustard	cytosol	48.38	51.2
Bra040183.1-P	Field mustard	cytosol	48.7	51.19
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	43.51	46.85
Bra000281.1-P	Field mustard	plastid	38.96	45.98
Bra005355.1-P	Field mustard	cytosol	42.21	45.77
Bra004732.1-P	Field mustard	plastid	38.64	45.59
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	44.81	43.95
Bra016853.1-P	Field mustard	plastid	37.01	43.68
Bra007176.1-P	Field mustard	plastid	41.88	43.43
Bra015738.1-P	Field mustard	nucleus	39.94	42.71
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	41.56	42.38
Bra014735.1-P	Field mustard	plastid	41.56	41.69
GSMUA_Achr3P11300_001	Banana	nucleus	30.84	41.48
Bra008262.1-P	Field mustard	nucleus	38.64	41.46
Bra003717.1-P	Field mustard	nucleus	38.64	41.46
Bra003217.1-P	Field mustard	nucleus	39.94	41.28
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	38.96	40.68
Bra012256.1-P	Field mustard	nucleus	40.26	40.13
Bra026211.1-P	Field mustard	plastid	26.62	40.0
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	42.86	38.94
Bra016444.1-P	Field mustard	nucleus	39.61	38.73
Bra025854.1-P	Field mustard	nucleus	33.12	35.66
Bra000593.1-P	Field mustard	cytosol	28.9	33.84

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra039338	EnsemblPlants:Bra039338.1	EnsemblPlants:Bra039338.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4FE17	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF2	SUPFAM:SSF117856	UniParc:UPI0002544266	SEG:seg	:	:

Description

AT2G45430 (E=4e-108) | DNA-binding protein-related

Coordinates

chrA04:+:18556238..18557164

Molecular Weight (calculated)

32359.9 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.533

Length

308 amino acids

Sequence
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ HNHGHDIDQH RIGGLKRDRD SEIDPNEHSS AGKDQNTPGS GGESGGGGGG GDNHITRRPR GRPAGSKNKP
101: KPPVIITRDS ANALKSHVME VANGCDVMES VTVFARRRQR GICVLSGNGA VTNVTIRQPA SVPGGGSSVV NLHGRFEILS LSGSFLPPPA PPAASGLTIY
201: LAGGQGQVVG GSVVGPLMAS GPVVIMAASF GNAAYERLPL EEDDQDEQQT AGAVANNIDG NATMGGGTQT QPQQLMQDPT SFIQGLPPSL MNSQLPAEAY
301: WGTPRPSF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.