Factsheet for PGSC0003DMT400033248

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091470.2.1	Tomato	nucleus	92.21	94.04
VIT_15s0048g00780.t01	Wine grape	nucleus	69.81	71.67
PGSC0003DMT400045315	Potato	nucleus	50.32	70.14
PGSC0003DMT400010004	Potato	nucleus	62.99	66.21
KRH76289	Soybean	nucleus	61.69	65.97
KRH65251	Soybean	nucleus	65.26	64.84
CDY18931	Canola	nucleus	62.99	62.78
Bra039338.1-P	Field mustard	nucleus	62.34	62.34
CDY37040	Canola	nucleus	62.34	62.34
CDX74739	Canola	nucleus	62.66	62.26
Bra004911.1-P	Field mustard	nucleus	62.01	62.01
CDY27387	Canola	nucleus	62.34	61.54
AT2G45430.1	Thale cress	nucleus	63.31	61.51
PGSC0003DMT400032509	Potato	nucleus	60.06	59.49
AT3G60870.1	Thale cress	nucleus	50.32	58.49
GSMUA_Achr1P19850_001	Banana	nucleus	57.79	57.98
PGSC0003DMT400004515	Potato	nucleus	38.31	52.68
PGSC0003DMT400025705	Potato	plastid	44.16	52.31
PGSC0003DMT400044573	Potato	cytosol	41.88	51.39
PGSC0003DMT400002959	Potato	nucleus	43.83	50.94
PGSC0003DMT400045203	Potato	nucleus	46.75	49.66
PGSC0003DMT400073795	Potato	nucleus	46.75	48.48
PGSC0003DMT400044451	Potato	nucleus	44.48	48.07
GSMUA_Achr3P11300_001	Banana	nucleus	33.77	45.41
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	42.21	41.4
PGSC0003DMT400024250	Potato	cytosol, plastid	32.14	36.8
PGSC0003DMT400005182	Potato	nucleus	28.25	32.46

Protein Annotations

EntrezGene:102582790	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M1AYU3	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400012769	PGSC:PGSC0003DMG400012769	EnsemblPlants:PGSC0003DMT400033248	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	SUPFAM:SSF117856	UniParc:UPI0002965C1C	RefSeq:XP_006339443.1	SEG:seg

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400012769]

Coordinates

chr1:+:70865903..70867479

Molecular Weight (calculated)

32446.0 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.595

Length

308 amino acids

Sequence
(BLAST)

001: MDQLTAHGRP LPPPFHTRDL QLQNNNPHLH GQFHHIQQQQ KTEDEQQSGH RNQKRDRDDN FSLNPDQSGS MDSKGNTIGG GGDGGGEVSR RPRGRPAGSK
101: NKPKPPIIIT RDSANALRSH VMEIASGCDI QESISNFATR RQRGVCILSG SGTVTNVTIR QPTSPGAVVT LHGRFEILSL SGSYLPPPAP PAASGLTIYL
201: AGGQGQVVGG SVVGPLNASG PVVIMAASFG NAAYERLPLE DEESPVGQQG NGGNLPTSSG IVSTNQAQQI MGTDPNANLL QGLPQNLLNS CQLPPAEAYW
301: GAGGRPPY

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.