Factsheet for PGSC0003DMT400044573

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400004137

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42940.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT2G42940.1	PGSC0003DMT400004137	AT4G38800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	94.02	94.02
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	66.53	67.07
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	66.14	66.94
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	70.92	66.42
Bra000281.1-P	Field mustard	plastid	61.75	59.39
AT2G42940.1	Thale cress	plastid	60.56	59.14
CDY53650	Canola	plastid	60.16	58.08
CDX79838	Canola	plastid	60.16	58.08
Bra004732.1-P	Field mustard	plastid	60.16	57.85
PGSC0003DMT400045315	Potato	nucleus	50.6	57.47
Bra016853.1-P	Field mustard	plastid	58.96	56.7
CDY14862	Canola	plastid	58.96	56.7
CDY70947	Canola	plastid	58.96	56.7
PGSC0003DMT400004515	Potato	nucleus	39.84	44.64
PGSC0003DMT400010004	Potato	nucleus	51.79	44.37
PGSC0003DMT400002959	Potato	nucleus	46.61	44.15
PGSC0003DMT400025705	Potato	plastid	43.82	42.31
PGSC0003DMT400033248	Potato	nucleus	51.39	41.88
PGSC0003DMT400073795	Potato	nucleus	49.0	41.41
PGSC0003DMT400044451	Potato	nucleus	47.01	41.4
PGSC0003DMT400032509	Potato	nucleus	51.0	41.16
PGSC0003DMT400045203	Potato	nucleus	45.42	39.31
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	45.02	35.99
PGSC0003DMT400024250	Potato	cytosol, plastid	35.86	33.46
PGSC0003DMT400005182	Potato	nucleus	31.08	29.1

Protein Annotations

EntrezGene:102601728	Gene3D:3.30.1330.80	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010208	GO:GO:0010228	GO:GO:0010529	GO:GO:0016043
GO:GO:0019538	GO:GO:0031490	GO:GO:0035067	GO:GO:1900111	InterPro:IPR005175	UniProt:M1BGE6
PFAM:PF03479	EnsemblPlantsGene:PGSC0003DMG400017302	PGSC:PGSC0003DMG400017302	EnsemblPlants:PGSC0003DMT400044573	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF17	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI0002956CCF	RefSeq:XP_006348956.1
SEG:seg	:	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017302]

Coordinates

chr7:+:51173676..51174431

Molecular Weight (calculated)

26329.6 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.104

Length

251 amino acids

Sequence
(BLAST)

001: MASCVTKETI SQNQEIGNNN LGGDTSGLML AAKVSVPVRD GDSSVRRPRG RPAGSKNKPK PPIIITRDSA NALRAHAMEV NSGCDVNESL VNFARRKQRG
101: ICVLSATGCV TNVTLRQPAT SGSIVTLHGR FEILSILGSV LPPPAPPGVT GLTIYLAGAQ GQVIGGGVVG ALIASGPVVI MAATFMNATF DRLPLDDDDL
201: VPSTAAQNQH YQKTHQRHQV DVPDIYGLPQ SVITNGAEVY SWAPGRTLSK S

Best Arabidopsis Sequence Match ( AT2G42940.1 )
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Arabidopsis Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.