Factsheet for PGSC0003DMT400073795

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006090.1.1	Tomato	nucleus	81.14	94.51
VIT_14s0081g00670.t01	Wine grape	mitochondrion	79.8	81.44
PGSC0003DMT400044451	Potato	nucleus	65.66	68.42
KRH34163	Soybean	nucleus	62.96	66.79
KRG92616	Soybean	nucleus	61.62	66.06
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	66.67	62.86
CDY64701	Canola	nucleus	64.98	62.06
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	59.93	61.81
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	59.6	61.25
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	64.31	60.83
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	64.31	60.83
PGSC0003DMT400045315	Potato	nucleus	44.78	60.18
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	57.91	58.31
PGSC0003DMT400010004	Potato	nucleus	49.16	49.83
PGSC0003DMT400002959	Potato	nucleus	43.77	49.06
PGSC0003DMT400044573	Potato	cytosol	41.41	49.0
PGSC0003DMT400004515	Potato	nucleus	36.7	48.66
PGSC0003DMT400025705	Potato	plastid	42.09	48.08
PGSC0003DMT400033248	Potato	nucleus	48.48	46.75
PGSC0003DMT400032509	Potato	nucleus	47.14	45.02
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	47.14	44.59
PGSC0003DMT400045203	Potato	nucleus	43.1	44.14
PGSC0003DMT400024250	Potato	cytosol, plastid	35.02	38.66
PGSC0003DMT400005182	Potato	nucleus	29.29	32.46

Protein Annotations

EntrezGene:102604198	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0045824	GO:GO:0050832	InterPro:IPR005175	UniProt:M1CSN9	PFAM:PF03479	EnsemblPlantsGene:PGSC0003DMG400028669
PGSC:PGSC0003DMG400028669	EnsemblPlants:PGSC0003DMT400073795	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF8	SUPFAM:SSF117856	UniParc:UPI000294F4C9	RefSeq:XP_006350955.1	RefSeq:XP_015165750.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028669]

Coordinates

chr11:-:6577318..6579039

Molecular Weight (calculated)

29969.1 Da

IEP (calculated)

6.244

GRAVY (calculated)

-0.409

Length

297 amino acids

Sequence
(BLAST)

001: MSNPWWTGQV DLQGVETSSS AGSPSLKKPD LGVSMNDNSG GSGSHDEDRD HSDDPKEGAV EVATRRPRGR PAGSKNKPKP PIFVTRDSPN ALRSHVMEVA
101: NGADVAESIA QFARKRQRGV CVLSATGTVT NVTLRQPSAP GAVMALHGRF EILSLTGAFL PGPAPPGSTG LTIYLAGGQG QVVGGSVVGS LVASGPVMVI
201: ASTFSNATYE RLPLEEEEEG GGTAAQGQLG GGGSPPGMGG SGGGGGGQQQ QGGGGGGGMG DIPSSNMPVY NLPPNLLPNG GQMNHEAFGW AHGRPPF

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.