Factsheet for PGSC0003DMT400045203

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077010.1.1	Tomato	cytosol	92.41	93.06
PGSC0003DMT400002959	Potato	nucleus	68.28	74.72
VIT_02s0012g00880.t01	Wine grape	cytosol	68.62	70.57
KRH58197	Soybean	cytosol	63.79	67.03
CDX90445	Canola	plastid	62.76	66.42
AT4G17800.1	Thale cress	cytosol	65.86	65.41
KRH04340	Soybean	cytosol	55.86	64.54
CDX78802	Canola	cytosol	64.48	64.26
CDY54780	Canola	cytosol	64.48	64.04
PGSC0003DMT400004515	Potato	nucleus	49.31	63.84
Bra040183.1-P	Field mustard	cytosol	64.48	63.82
Bra012639.1-P	Field mustard	cytosol	63.79	63.57
PGSC0003DMT400045315	Potato	nucleus	44.83	58.82
GSMUA_Achr5P03390_001	Banana	nucleus	51.03	57.14
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	49.66	56.47
GSMUA_Achr5P13920_001	Banana	nucleus	40.34	51.54
PGSC0003DMT400010004	Potato	nucleus	50.0	49.49
PGSC0003DMT400025705	Potato	plastid	42.41	47.31
PGSC0003DMT400033248	Potato	nucleus	49.66	46.75
PGSC0003DMT400044573	Potato	cytosol	39.31	45.42
PGSC0003DMT400044451	Potato	nucleus	44.48	45.26
PGSC0003DMT400032509	Potato	nucleus	46.9	43.73
PGSC0003DMT400073795	Potato	nucleus	44.14	43.1
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	43.1	39.81
PGSC0003DMT400024250	Potato	cytosol, plastid	32.76	35.32
PGSC0003DMT400005182	Potato	nucleus	29.66	32.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400045203	EnsemblPlantsGene:PGSC0003DMG400017534	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF21	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400017534	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000296594D	UniProt:M1BH99	MapMan:35.1	:	:	:

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400017534]

Coordinates

chr8:+:49751166..49752586

Molecular Weight (calculated)

30615.8 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.345

Length

290 amino acids

Sequence
(BLAST)

001: MAGLDLSSAS RYVHQLHHPE FNLQIQPEND ENTKNNPFSN DHINHDHNHH QFDLVGANSS GPGDLVGRRP RGRPPGSKNK PKPPVIITRE SANTLRAHIL
101: EIGNGCDVFE CISSYARRRQ RGICILSGSG IVTNVSIRQP TSTGNNNNIS SSSVVTLNGR FEILSLSGSF LPPPAPPGAT SLTIFLAGGQ GQVVGGSVVG
201: ELMAAGPVIV IASSFTNVAY ERLPLEEDGN TQGSDGGGDG VVNNNPFSDP SNPGLPFFNL PLNMPNCFNP GSASVDGWVG NPSLRPPFGV

Best Arabidopsis Sequence Match ( AT4G17800.1 )
(BLAST)

001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF

Arabidopsis Description

AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.