Factsheet for GSMUA_Achr5P03390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P13920_001	Banana	nucleus	62.55	71.37
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	66.41	67.45
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	60.62	62.55
VIT_02s0012g00880.t01	Wine grape	cytosol	64.09	58.87
GSMUA_Achr8P14790_001	Banana	plastid	62.16	57.71
CDX90445	Canola	plastid	58.3	55.11
GSMUA_Achr9P23390_001	Banana	plastid	53.67	54.72
AT4G17800.1	Thale cress	cytosol	61.39	54.45
CDX78802	Canola	cytosol	59.85	53.26
KRH58197	Soybean	cytosol	56.76	53.26
Bra040183.1-P	Field mustard	cytosol	59.85	52.9
CDY54780	Canola	cytosol	59.07	52.4
Bra012639.1-P	Field mustard	cytosol	58.69	52.23
PGSC0003DMT400002959	Potato	nucleus	53.28	52.08
Solyc08g077010.1.1	Tomato	cytosol	56.76	51.04
PGSC0003DMT400045203	Potato	nucleus	57.14	51.03
KRH04340	Soybean	cytosol	49.42	51.0
GSMUA_Achr2P04080_001	Banana	cytosol	41.31	45.53
GSMUA_AchrUn_...	Banana	cytosol	28.96	44.91
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	42.86	42.37
GSMUA_Achr5P19550_001	Banana	cytosol	42.86	41.11
GSMUA_Achr1P19850_001	Banana	nucleus	48.26	40.72
GSMUA_Achr11P...	Banana	cytosol	27.03	40.7
GSMUA_Achr11P...	Banana	nucleus	45.56	40.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	47.1	40.0
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	47.1	39.48
GSMUA_Achr7P15000_001	Banana	nucleus	42.47	39.43
GSMUA_Achr7P10630_001	Banana	plastid	42.86	38.14
GSMUA_Achr1P08290_001	Banana	nucleus	45.17	38.11
GSMUA_Achr6P01060_001	Banana	nucleus	40.93	37.86
GSMUA_Achr9P12320_001	Banana	plastid	40.93	37.72
GSMUA_Achr3P11300_001	Banana	nucleus	32.82	37.12
GSMUA_Achr9P28280_001	Banana	plastid	42.47	36.67
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	39.0	35.19
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	23.17	32.26
GSMUA_Achr10P...	Banana	nucleus	31.66	29.39
GSMUA_Achr8P23410_001	Banana	cytosol	22.39	28.29
GSMUA_Achr3P06770_001	Banana	cytosol	21.24	24.23
GSMUA_AchrUn_...	Banana	nucleus	30.89	23.88

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03390_001	EnsemblPlants:GSMUA_Achr5T03390_001	EnsemblPlantsGene:GSMUA_Achr5G03390_001	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF21	PFAM:PF03479	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000294F257	UniProt:M0SVB8
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G03390_001]

Coordinates

chr5:-:2347707..2348582

Molecular Weight (calculated)

26692.2 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.345

Length

259 amino acids

Sequence
(BLAST)

001: MAGLDLSTAT RYVHHHHLHL AHHLNPSSED DNNNSSSAKI EHGQFSGAAE SDDSPFTPDQ GAAQGGAAGR RPRGRPPGSK NKPKPPVIIT QESANTLRAH
101: ILEVGAGCDV FDCIATYARR RQRGILSLSG SFLPPPAPPG ATSLTIFLAG GQGQVVGGNV AGTLLAAGPV LVITASFTNV AYERLPLEEE ESPPLQMQPP
201: APQGSGGDGG SGGAGGSPFP DPSSILPLFN LPLNMTNSQL PADGHGWAGE ATATRRLPF

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.