Factsheet for GSMUA_Achr3P11300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19850_001	Banana	nucleus	54.15	40.39
VIT_15s0048g00780.t01	Wine grape	nucleus	48.91	37.33
GSMUA_Achr5P13920_001	Banana	nucleus	34.93	35.24
KRH65251	Soybean	nucleus	46.29	34.19
PGSC0003DMT400033248	Potato	nucleus	45.41	33.77
Solyc01g091470.2.1	Tomato	nucleus	43.67	33.11
GSMUA_Achr1P08290_001	Banana	nucleus	44.1	32.9
GSMUA_Achr5P03390_001	Banana	nucleus	37.12	32.82
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	43.67	32.79
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	43.67	32.36
KRH76289	Soybean	nucleus	40.61	32.29
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	35.37	32.27
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	35.37	31.76
GSMUA_Achr9P23390_001	Banana	plastid	34.5	31.1
AT2G45430.1	Thale cress	nucleus	42.79	30.91
Bra039338.1-P	Field mustard	nucleus	41.48	30.84
CDY37040	Canola	nucleus	41.48	30.84
CDY27387	Canola	nucleus	41.48	30.45
CDY18931	Canola	nucleus	41.05	30.42
CDX74739	Canola	nucleus	41.05	30.32
Bra004911.1-P	Field mustard	nucleus	40.61	30.19
GSMUA_Achr8P14790_001	Banana	plastid	36.68	30.11
AT3G60870.1	Thale cress	nucleus	33.62	29.06
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	32.75	28.63
GSMUA_Achr11P...	Banana	nucleus	35.81	27.89
GSMUA_Achr2P04080_001	Banana	cytosol	28.38	27.66
GSMUA_Achr5P19550_001	Banana	cytosol	31.44	26.67
GSMUA_Achr7P15000_001	Banana	nucleus	31.0	25.45
GSMUA_Achr7P10630_001	Banana	plastid	31.88	25.09
GSMUA_AchrUn_...	Banana	cytosol	17.47	23.95
GSMUA_Achr6P01060_001	Banana	nucleus	29.26	23.93
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	29.69	23.69
GSMUA_Achr9P12320_001	Banana	plastid	28.38	23.13
GSMUA_Achr11P...	Banana	cytosol	16.59	22.09
GSMUA_Achr9P28280_001	Banana	plastid	28.82	22.0
GSMUA_Achr10P...	Banana	nucleus	23.58	19.35
GSMUA_AchrUn_...	Banana	nucleus	22.27	15.22
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	11.79	14.52
GSMUA_Achr8P23410_001	Banana	cytosol	11.79	13.17
GSMUA_Achr3P06770_001	Banana	cytosol	12.66	12.78

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11300_001	EnsemblPlants:GSMUA_Achr3T11300_001	EnsemblPlantsGene:GSMUA_Achr3G11300_001	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SEG:seg
SUPFAM:SSF117856	UniParc:UPI000295849C	UniProt:M0SDP7	MapMan:35.2	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G11300_001]

Coordinates

chr3:-:8398081..8399022

Molecular Weight (calculated)

24406.4 Da

IEP (calculated)

6.976

GRAVY (calculated)

-0.724

Length

229 amino acids

Sequence
(BLAST)

001: MDPMTASTHG HHLPPFRARD FHHLHHSPQV PQHFQTQQQQ QPKIEEEHSS LHRGNMDDSS SNNNNNFIGS NSSNSADGKE QAPMTSPGSG GAEGEINRKP
101: RGRPPGSKNK PKPPIIITRN SANALLSHGQ VVGGSVVGPL IALGPIIIMA ASFGSAAYER LPLPEEEGLQ AQGPLGSPDF VGQSPQAQQQ LLPDPNNPLF
201: HNLSPSLLNN MQSPADAYGW GAGGVRPAY

Best Arabidopsis Sequence Match ( AT4G22810.1 )
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY

Arabidopsis Description

AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.