Factsheet for GSMUA_Achr5P19550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P05900_001
GSMUA_Achr7P12530_001
GSMUA_Achr9P15630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT4G14465.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT4G14465.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	50.0	78.49
GSMUA_Achr2P04080_001	Banana	cytosol	61.48	70.64
GSMUA_AchrUn_...	Banana	cytosol	42.96	69.46
VIT_05s0049g00100.t01	Wine grape	cytosol	64.07	66.54
Zm00001d018508_P001	Maize	cytosol	59.63	65.71
KRG90376	Soybean	nucleus	64.44	64.93
Os08t0563200-01	Rice	cytosol	56.3	64.68
KRH31728	Soybean	cytosol	64.44	64.44
Solyc09g089620.1.1	Tomato	nucleus	67.78	63.99
PGSC0003DMT400044451	Potato	nucleus	66.67	63.16
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	58.15	62.8
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	61.85	62.78
KRH34516	Soybean	cytosol, nucleus, peroxisome	66.3	61.72
Zm00001d031887_P001	Maize	nucleus	61.11	61.34
KXG25365	Sorghum	nucleus	60.74	60.74
Zm00001d049906_P001	Maize	nucleus	59.26	60.38
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	63.7	59.31
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	63.7	59.31
HORVU6Hr1G091740.1	Barley	cytosol	64.07	59.25
CDY12779	Canola	cytosol, nucleus, vacuole	61.85	59.22
CDY23160	Canola	cytosol, nucleus, vacuole	61.11	59.14
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	61.48	59.07
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	64.07	59.04
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	61.11	58.72
KRG92293	Soybean	cytosol, mitochondrion, nucleus	65.19	58.09
HORVU4Hr1G000870.2	Barley	nucleus	61.48	57.84
TraesCS6A01G053800.1	Wheat	nucleus	60.0	57.45
OQU85972	Sorghum	cytosol	62.96	57.24
TraesCS4A01G312400.1	Wheat	nucleus	60.37	57.19
TraesCS6B01G072300.1	Wheat	nucleus	59.63	57.09
TraesCS4D01G001800.1	Wheat	nucleus	60.0	56.84
TraesCS6D01G055500.1	Wheat	cytosol	59.26	56.74
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	53.7	55.34
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	37.04	52.91
GSMUA_Achr9P23390_001	Banana	plastid	48.15	51.18
GSMUA_Achr7P10630_001	Banana	plastid	50.37	46.74
GSMUA_Achr11P...	Banana	nucleus	50.74	46.6
GSMUA_Achr6P01060_001	Banana	nucleus	47.78	46.07
GSMUA_Achr9P12320_001	Banana	plastid	47.41	45.55
GSMUA_Achr8P14790_001	Banana	plastid	47.04	45.52
GSMUA_Achr7P15000_001	Banana	nucleus	46.67	45.16
GSMUA_Achr1P19850_001	Banana	nucleus	51.11	44.95
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	47.78	44.95
GSMUA_Achr9P28280_001	Banana	plastid	49.63	44.67
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	30.74	44.62
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	40.74	43.82
GSMUA_Achr5P03390_001	Banana	nucleus	41.11	42.86
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	47.78	42.3
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	47.41	41.42
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	38.89	41.18
GSMUA_Achr1P08290_001	Banana	nucleus	46.67	41.04
HORVU0Hr1G011700.1	Barley	cytosol	32.59	40.74
GSMUA_Achr10P...	Banana	nucleus	39.26	37.99
GSMUA_Achr8P23410_001	Banana	cytosol	28.15	37.07
GSMUA_Achr5P13920_001	Banana	nucleus	30.74	36.56
GSMUA_Achr3P06770_001	Banana	cytosol	28.15	33.48
GSMUA_Achr3P11300_001	Banana	nucleus	26.67	31.44
GSMUA_AchrUn_...	Banana	nucleus	34.81	28.06

Protein Annotations

EnsemblPlants:GSMUA_Achr5P19550_001	EnsemblPlants:GSMUA_Achr5T19550_001	EnsemblPlantsGene:GSMUA_Achr5G19550_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF42	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000294946F	UniProt:M0SZY4	MapMan:35.1	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19550_001]

Coordinates

chr5:-:21196310..21197496

Molecular Weight (calculated)

27966.1 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.293

Length

270 amino acids

Sequence
(BLAST)

001: MSNPWWAGNL GLPRVEPASS GRKKLEDEMQ PKGTEPFGSR ADDEDDRDNN DDPKEGAVEV GSRRPRGRPP GSKNKPKPPI FITRDSPNAL RSHVMEVAAG
101: ADVADCIAQF ARRRQCGVSV LSGAGAVANV TLRQPAAPGS VVALHGRFEI LSLTGTFLPG PAPPGTSGLA VYLAGGQGQV VGGTVVGSLI ATGPVMVVAA
201: TFATATYERL PLEEEDEAAG ANAGLPSSLT GGLPDPSLLN MYSLPPNLMP NGGQLGHDAL AWAHARPPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.