Factsheet for GSMUA_Achr1P08290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	81.76	81.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	78.5	79.02
GSMUA_Achr1P19850_001	Banana	nucleus	59.93	59.93
GSMUA_AchrUn_...	Banana	cytosol	31.27	57.48
GSMUA_Achr2P04080_001	Banana	cytosol	41.04	53.62
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	45.6	53.44
GSMUA_Achr9P23390_001	Banana	plastid	43.65	52.76
GSMUA_Achr11P...	Banana	cytosol	28.99	51.74
GSMUA_Achr8P14790_001	Banana	plastid	45.6	50.18
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	38.44	47.01
GSMUA_Achr5P19550_001	Banana	cytosol	41.04	46.67
GSMUA_Achr11P...	Banana	nucleus	44.63	46.6
GSMUA_Achr7P10630_001	Banana	plastid	43.65	46.05
GSMUA_Achr7P15000_001	Banana	nucleus	41.69	45.88
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	42.67	45.64
GSMUA_Achr5P03390_001	Banana	nucleus	38.11	45.17
GSMUA_Achr6P01060_001	Banana	nucleus	41.04	45.0
GSMUA_Achr3P11300_001	Banana	nucleus	32.9	44.1
GSMUA_Achr9P28280_001	Banana	plastid	41.37	42.33
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	34.53	41.57
GSMUA_Achr5P13920_001	Banana	nucleus	30.29	40.97
GSMUA_Achr9P12320_001	Banana	plastid	37.46	40.93
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	24.1	39.78
GSMUA_Achr10P...	Banana	nucleus	29.97	32.97
GSMUA_Achr8P23410_001	Banana	cytosol	21.82	32.68
GSMUA_Achr3P06770_001	Banana	cytosol	20.2	27.31
GSMUA_AchrUn_...	Banana	nucleus	29.64	27.16

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G08290_001	EnsemblPlants:GSMUA_Achr1P08290_001	EnsemblPlants:GSMUA_Achr1T08290_001	InterPro:IPR005175
UniProt:M0RY37	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	UniParc:UPI000296183C	SEG:seg	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G08290_001]

Coordinates

chr1:+:6379111..6380034

Molecular Weight (calculated)

32352.1 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.415

Length

307 amino acids

Sequence
(BLAST)

001: MDPISASTHG HHLPPPFHGQ EFHPLHFQHL QQQQQLKVEE EHSGLRRGTK RDHDDSNNDE NNNSSGGDGK ELAPATFSAG GEGEIMRRPR GRPAGSKNKP
101: KPPIIITRDS ANALRSHVME IASGCDIVES VASFACRRQR GVCILSGNGT VTNVNLRQPA SSSAVVNLRG RFEILSLSGS FLPPPAPPAA SGLTIYLAGG
201: QGQIVGGSVV GALIASGPVI IMAASFGNAA YERLPLDEEE PLQAQQGALG SPGLVGQSTP PQQPQQQQLL DPNNPLLHGI PPNLLNNLQL PAEAYSWATG
301: AGGRASF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.