Factsheet for GSMUA_Achr3P27580_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23390_001	Banana	plastid	76.49	75.59
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	63.35	62.35
GSMUA_Achr5P03390_001	Banana	nucleus	62.55	60.62
GSMUA_Achr8P14790_001	Banana	plastid	66.53	59.86
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	62.55	53.95
GSMUA_Achr5P13920_001	Banana	nucleus	48.61	53.74
Os08t0159700-01	Rice	cytosol	61.75	53.63
TraesCS7D01G294700.1	Wheat	cytosol, nucleus, peroxisome	60.16	53.17
TraesCS7A01G299100.1	Wheat	cytosol, nucleus, plastid	60.16	53.17
TraesCS7B01G187300.1	Wheat	cytosol, nucleus, peroxisome	59.76	52.82
HORVU7Hr1G070490.2	Barley	cytosol, mitochondrion, peroxisome	58.17	50.69
KXG24494	Sorghum	nucleus	59.76	50.34
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	58.96	49.5
GSMUA_Achr2P04080_001	Banana	cytosol	42.23	45.11
GSMUA_AchrUn_...	Banana	cytosol	29.08	43.71
GSMUA_Achr11P...	Banana	cytosol	28.69	41.86
GSMUA_Achr1P19850_001	Banana	nucleus	51.0	41.69
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	43.43	41.6
GSMUA_Achr5P19550_001	Banana	cytosol	43.82	40.74
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	49.4	40.13
GSMUA_Achr9P12320_001	Banana	plastid	44.22	39.5
GSMUA_Achr7P15000_001	Banana	nucleus	43.82	39.43
GSMUA_Achr7P10630_001	Banana	plastid	45.42	39.18
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	47.41	39.02
GSMUA_Achr6P01060_001	Banana	nucleus	43.03	38.57
GSMUA_Achr1P08290_001	Banana	nucleus	47.01	38.44
GSMUA_Achr11P...	Banana	nucleus	45.02	38.44
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	40.64	35.54
GSMUA_Achr3P11300_001	Banana	nucleus	32.27	35.37
GSMUA_Achr9P28280_001	Banana	plastid	41.83	35.0
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	22.71	30.65
GSMUA_Achr10P...	Banana	nucleus	32.27	29.03
GSMUA_Achr8P23410_001	Banana	cytosol	22.31	27.32
GSMUA_AchrUn_...	Banana	nucleus	32.27	24.18
GSMUA_Achr3P06770_001	Banana	cytosol	20.72	22.91

Protein Annotations

EnsemblPlants:GSMUA_Achr3P27580_001	EnsemblPlants:GSMUA_Achr3T27580_001	EnsemblPlantsGene:GSMUA_Achr3G27580_001	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF21	PFAM:PF03479	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000296E289	UniProt:M0SIC4
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27580_001]

Coordinates

chr3:-:27100419..27101267

Molecular Weight (calculated)

25557.2 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.156

Length

251 amino acids

Sequence
(BLAST)

001: MAGLDLGTAS RFVHPLHLHL PHTKPDSDDS PVATDEAANH GLELSAPAGP GDVIGRRPRG RPPGSKNKPK PPVIITRESA NALRAHILEV GSGCDVFECL
101: STYARRRQRG ILSLSGSFLP PPAPPGATSL AVFLAGGQGQ VVGGSVVGAL IAAGSVTVIA ASFTNVAYER LPLDEEEEEA AAATQQLQMH PPASQSPSGG
201: GGGTSGALGP SFTDPSSGLP FFNLPLNMPQ LPVDGHGGWH GSAAAAARPP Y

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.