Factsheet for GSMUA_Achr5P28720_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	78.24	69.73
GSMUA_AchrUn_...	Banana	cytosol	38.93	61.08
KRH73062	Soybean	cytosol	51.53	58.95
KRH15076	Soybean	nucleus	38.93	58.62
GSMUA_Achr11P...	Banana	cytosol	38.17	58.14
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	56.11	57.42
GSMUA_Achr6P01060_001	Banana	nucleus	61.07	57.14
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	55.73	57.03
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	55.73	57.03
GSMUA_Achr2P04080_001	Banana	cytosol	51.15	57.02
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	54.96	56.25
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	60.31	55.05
KRH31005	Soybean	nucleus	59.92	54.33
Os03t0270000-01	Rice	nucleus	53.05	53.88
GSMUA_Achr5P19550_001	Banana	cytosol	55.34	53.7
GSMUA_Achr7P10630_001	Banana	plastid	59.54	53.61
GSMUA_Achr7P15000_001	Banana	nucleus	56.11	52.69
GSMUA_Achr9P28280_001	Banana	plastid	59.92	52.33
KRG97871	Soybean	nucleus	60.31	52.32
EER95114	Sorghum	nucleus	54.2	52.21
Zm00001d028577_P001	Maize	nucleus	54.2	52.01
VIT_13s0019g02080.t01	Wine grape	nucleus	61.83	49.54
GSMUA_Achr9P23390_001	Banana	plastid	46.95	48.43
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	55.73	46.5
Bra003217.1-P	Field mustard	nucleus	52.67	46.31
CDY02949	Canola	plastid	54.2	46.25
Solyc05g053000.1.1	Tomato	nucleus	54.96	46.01
CDY53687	Canola	nucleus	52.29	45.97
CDY60321	Canola	plastid	51.91	45.95
Bra014735.1-P	Field mustard	plastid	53.82	45.93
GSMUA_Achr1P19850_001	Banana	nucleus	53.82	45.93
CDX76085	Canola	plastid	53.82	45.93
AT3G55560.1	Thale cress	plastid	54.2	45.81
GSMUA_Achr1P08290_001	Banana	nucleus	53.44	45.6
GSMUA_Achr8P14790_001	Banana	plastid	48.47	45.52
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	52.67	45.25
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	53.05	44.98
CDY68242	Canola	plastid	50.76	44.78
CDY41211	Canola	plastid	50.38	44.75
Bra007176.1-P	Field mustard	plastid	50.38	44.44
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	41.6	43.43
GSMUA_Achr5P03390_001	Banana	nucleus	42.37	42.86
GSMUA_Achr9P12320_001	Banana	plastid	45.42	42.35
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	40.46	41.57
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	29.39	41.4
GSMUA_Achr5P13920_001	Banana	nucleus	30.92	35.68
GSMUA_Achr10P...	Banana	nucleus	35.88	33.69
GSMUA_Achr3P11300_001	Banana	nucleus	28.63	32.75
GSMUA_Achr8P23410_001	Banana	cytosol	25.57	32.68
GSMUA_Achr3P06770_001	Banana	cytosol	28.24	32.6
GSMUA_AchrUn_...	Banana	nucleus	36.64	28.66

Protein Annotations

EnsemblPlants:GSMUA_Achr5P28720_001	EnsemblPlants:GSMUA_Achr5T28720_001	EnsemblPlantsGene:GSMUA_Achr5G28720_001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000295F7A8	UniProt:M0T2J6	MapMan:35.1	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_81.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G28720_001]

Coordinates

chr5:-:28771090..28774526

Molecular Weight (calculated)

26762.7 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.175

Length

262 amino acids

Sequence
(BLAST)

001: MTDRLVTKGE LANRWWAGSV AMGGVDPVNN NHANDDDAIG DDHSGGGGGG GSGGLDVLEA GSGGSGSSGR RPRGRPRGSK NKPKPPVIIT RESPNALRSH
101: VLEIASGTDI MDAVTVFARR RQRGLSILSG TGVVTNVTLR QPAAPPGTVV SLHGRFEILS LSGAFLPAPS PPGATGLTVY LAGGQGQVVG GSVVGELVAS
201: GPVMIIAATF TNATYERLPL GEEELDTPPL LNLPPNLLPN GQMPHEVFGA WASTGSRAPP SY

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.