Factsheet for GSMUA_Achr2P04780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03390_001	Banana	nucleus	67.45	66.41
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	62.35	63.35
GSMUA_Achr5P13920_001	Banana	nucleus	51.37	57.71
GSMUA_Achr9P23390_001	Banana	plastid	56.47	56.69
VIT_02s0012g00880.t01	Wine grape	cytosol	61.96	56.03
GSMUA_Achr8P14790_001	Banana	plastid	59.61	54.48
CDX90445	Canola	plastid	57.65	53.65
KRH58197	Soybean	cytosol	56.86	52.54
AT4G17800.1	Thale cress	cytosol	58.82	51.37
CDX78802	Canola	cytosol	58.43	51.2
KRH04340	Soybean	cytosol	50.2	51.0
Bra012639.1-P	Field mustard	cytosol	58.04	50.86
Bra040183.1-P	Field mustard	cytosol	58.43	50.85
CDY54780	Canola	cytosol	58.04	50.68
Solyc08g077010.1.1	Tomato	cytosol	56.86	50.35
PGSC0003DMT400002959	Potato	nucleus	52.16	50.19
PGSC0003DMT400045203	Potato	nucleus	56.47	49.66
GSMUA_Achr2P04080_001	Banana	cytosol	39.61	42.98
GSMUA_AchrUn_...	Banana	cytosol	27.45	41.92
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	41.57	40.46
GSMUA_Achr11P...	Banana	cytosol	26.67	39.53
GSMUA_Achr5P19550_001	Banana	cytosol	41.18	38.89
GSMUA_Achr1P19850_001	Banana	nucleus	45.88	38.11
GSMUA_Achr7P15000_001	Banana	nucleus	41.57	37.99
GSMUA_Achr9P12320_001	Banana	plastid	41.57	37.72
GSMUA_Achr7P10630_001	Banana	plastid	42.75	37.46
GSMUA_Achr11P...	Banana	nucleus	42.75	37.07
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	43.53	35.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	42.35	35.41
GSMUA_Achr3P11300_001	Banana	nucleus	31.76	35.37
GSMUA_Achr6P01060_001	Banana	nucleus	38.43	35.0
GSMUA_Achr1P08290_001	Banana	nucleus	41.57	34.53
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	38.82	34.49
GSMUA_Achr9P28280_001	Banana	plastid	38.43	32.67
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	21.96	30.11
GSMUA_Achr10P...	Banana	nucleus	31.37	28.67
GSMUA_Achr8P23410_001	Banana	cytosol	21.96	27.32
GSMUA_Achr3P06770_001	Banana	cytosol	21.96	24.67
GSMUA_AchrUn_...	Banana	nucleus	30.59	23.28

Protein Annotations

EnsemblPlants:GSMUA_Achr2P04780_001	EnsemblPlants:GSMUA_Achr2T04780_001	EnsemblPlantsGene:GSMUA_Achr2G04780_001	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF21	PFAM:PF03479	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0002960445	UniProt:M0S569
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G04780_001]

Coordinates

chr2:+:10110130..10110996

Molecular Weight (calculated)

26571.7 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.196

Length

255 amino acids

Sequence
(BLAST)

001: MAGLDLGTAS RFVHPLHLHL PHLNPDPDES PPAQAAGDAS SEEPRSQGLE LAAPAGPGDV VVRRPRGRPP GSKNRPKPPV IITRESANTL RAHILEVGSG
101: CDVFDCIATY ACRRQRGILS LSGSFLPPPA PPGATSLTIF LVGGQGQVIG GSVVGELIAA GPVIVIGATF TKVAYERLPL EEEEEPPQQQ PQLEIHPPMS
201: QSPTVGGATT AGIGASFRDP SSGLQFFNLP LSMPPWPVDG HGGWPGSAVP SRPPY

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.