Factsheet for GSMUA_AchrUn_randomP10920_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23410_001	Banana	cytosol	44.78	73.17
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	40.6	73.12
GSMUA_Achr10P...	Banana	nucleus	55.82	67.03
GSMUA_Achr3P06770_001	Banana	cytosol	40.6	59.91
Os09t0464300-00	Rice	nucleus	52.84	52.99
TraesCS5D01G252500.1	Wheat	cytosol	51.34	51.34
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	51.04	50.89
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	51.04	50.29
Zm00001d020768_P001	Maize	cytosol	48.36	48.65
Zm00001d005923_P001	Maize	nucleus	49.55	48.26
KRH72453	Soybean	nucleus	38.81	47.97
OQU89633	Sorghum	cytosol	50.45	47.74
KRH62181	Soybean	nucleus	39.7	47.5
KRH52892	Soybean	nucleus	39.7	46.83
Bra026211.1-P	Field mustard	plastid	28.06	45.85
CDY45266	Canola	plastid	28.06	45.85
VIT_18s0001g07380.t01	Wine grape	nucleus	33.43	45.71
KRH16838	Soybean	nucleus	34.63	45.31
PGSC0003DMT400024250	Potato	cytosol, plastid	35.82	44.61
KXG25333	Sorghum	cytosol	43.88	44.14
Os08t0478466-01	Rice	nucleus	42.69	44.14
CDX83182	Canola	cytosol	31.04	42.45
CDY21451	Canola	cytosol	31.04	42.45
AT1G14490.2	Thale cress	plastid	28.36	42.22
Bra000593.1-P	Field mustard	cytosol	33.13	42.21
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	36.72	41.84
AT5G49700.1	Thale cress	nucleus	34.33	41.67
Solyc04g076220.2.1	Tomato	nucleus	40.0	39.88
Solyc12g087950.1.1	Tomato	nucleus	31.34	39.47
PGSC0003DMT400005182	Potato	nucleus	31.34	39.18
GSMUA_Achr9P23390_001	Banana	plastid	29.25	38.58
GSMUA_AchrUn_...	Banana	cytosol	19.1	38.32
GSMUA_Achr2P04080_001	Banana	cytosol	25.97	37.02
CDY65376	Canola	nucleus	30.15	36.73
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	28.66	36.64
GSMUA_Achr11P...	Banana	cytosol	18.81	36.63
GSMUA_Achr8P14790_001	Banana	plastid	30.15	36.2
GSMUA_Achr9P12320_001	Banana	plastid	29.25	34.88
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	29.85	34.84
GSMUA_Achr5P19550_001	Banana	cytosol	28.06	34.81
GSMUA_Achr11P...	Banana	nucleus	29.55	33.67
GSMUA_Achr3P27580_001	Banana	cytosol, nucleus, plastid	24.18	32.27
GSMUA_Achr6P01060_001	Banana	nucleus	26.87	32.14
GSMUA_Achr9P28280_001	Banana	plastid	28.66	32.0
GSMUA_Achr7P10630_001	Banana	plastid	26.87	30.93
GSMUA_Achr5P03390_001	Banana	nucleus	23.88	30.89
GSMUA_Achr2P03140_001	Banana	cytosol, nucleus, vacuole	28.36	30.74
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	23.28	30.59
GSMUA_Achr7P15000_001	Banana	nucleus	25.07	30.11
GSMUA_Achr1P19850_001	Banana	nucleus	27.46	29.97
GSMUA_Achr10P...	Banana	cytosol, nucleus, vacuole	27.16	29.84
GSMUA_Achr1P08290_001	Banana	nucleus	27.16	29.64
GSMUA_Achr5P13920_001	Banana	nucleus	17.01	25.11
GSMUA_Achr3P11300_001	Banana	nucleus	15.22	22.27

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG10920_001	EnsemblPlants:GSMUA_AchrUn_randomP10920_001	EnsemblPlants:GSMUA_AchrUn_randomT10920_001
InterPro:IPR005175	UniProt:M0U851	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF41	SUPFAM:SSF117856	UniParc:UPI0002964648	SEG:seg	:

Description

DNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10920_001]

Coordinates

chrchrUn_random:-:53184245..53185252

Molecular Weight (calculated)

35998.6 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.447

Length

335 amino acids

Sequence
(BLAST)

001: MFFDSFSENN MKNKNDDDRR DVISRFHHHY LQQQQHQQQQ NKKECLSDEV DSARSSGEIQ KPKTDVEQNV EKALVVINSG GDGGAGDGAT VEVAKRRRGR
101: PPGSKNKPKP PVVITQEADP LASMRPHVLE IPARHDVVES LARFSRRRNL GICILAGTGA VANVSLRQPH FAGAPPPPNA SAAATSIGFQ GRFEILSISA
201: SFFPPAMAAF STGISGEMSI TLAGPQGQIV GGTVTGPLMA TGTVVIVAAA FSNPTFHRLP VEDLSMSVSV SGGVGEPEEQ HHQHQQQEHR PRRNQGPAAT
301: TMSAPETCGM SIYSGHLSSE VIWMPTARPP LPPPF

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.