Factsheet for Solyc12g087950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005182	Potato	nucleus	87.22	86.57
CDX83182	Canola	cytosol	45.86	49.8
CDY21451	Canola	cytosol	45.86	49.8
KRH62181	Soybean	nucleus	52.26	49.64
KRH52892	Soybean	nucleus	52.26	48.94
VIT_18s0001g07380.t01	Wine grape	nucleus	44.36	48.16
Bra000593.1-P	Field mustard	cytosol	47.37	47.91
CDY45266	Canola	plastid	36.84	47.8
Bra026211.1-P	Field mustard	plastid	36.47	47.32
AT1G14490.2	Thale cress	plastid	39.85	47.11
AT5G49700.1	Thale cress	nucleus	48.5	46.74
Solyc04g076220.2.1	Tomato	nucleus	57.89	45.83
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	31.58	45.16
KRH72453	Soybean	nucleus	45.86	45.02
KRH16838	Soybean	nucleus	42.11	43.75
GSMUA_Achr10P...	Banana	nucleus	40.6	38.71
GSMUA_Achr8P23410_001	Banana	cytosol	28.95	37.56
CDY65376	Canola	nucleus	38.72	37.45
Solyc06g060500.1.1	Tomato	nucleus	30.08	36.36
GSMUA_Achr3P06770_001	Banana	cytosol	30.83	36.12
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	32.71	35.51
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	29.7	31.47
Os09t0464300-00	Rice	nucleus	39.47	31.44
GSMUA_AchrUn_...	Banana	nucleus	39.47	31.34
Solyc11g006090.1.1	Tomato	nucleus	29.7	30.98
Solyc09g089620.1.1	Tomato	nucleus	33.08	30.77
Zm00001d020768_P001	Maize	cytosol	37.97	30.33
Zm00001d005923_P001	Maize	nucleus	39.1	30.23
Solyc01g080960.2.1	Tomato	nucleus	30.08	30.19
TraesCS5D01G252500.1	Wheat	cytosol	37.59	29.85
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	37.59	29.76
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	37.59	29.41
Solyc08g077010.1.1	Tomato	cytosol	31.58	29.17
OQU89633	Sorghum	cytosol	38.35	28.81
Solyc01g091470.2.1	Tomato	nucleus	32.33	28.48
Solyc08g079720.2.1	Tomato	nucleus	30.83	28.08
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	29.32	26.53
Os08t0478466-01	Rice	nucleus	31.95	26.23
Solyc05g053000.1.1	Tomato	nucleus	30.45	25.88
KXG25333	Sorghum	cytosol	31.95	25.53
Solyc08g007560.1.1	Tomato	nucleus	30.45	25.39

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4DGL6	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF1	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc12g087950.1
EnsemblPlants:Solyc12g087950.1.1	UniParc:UPI000276A846	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4DGL6]

Coordinates

chr12:-:63451830..63452630

Molecular Weight (calculated)

28756.0 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.352

Length

266 amino acids

Sequence
(BLAST)

001: MKEKYIEERK NHSSNIDMFA KLHQTQNFQL HHQLTVPTAA LPSSSANDGA TIEVIRRSRG RPPGSKNKSK SKLKPSFIIA TRDGHVEKPT MSPYILEIPI
101: GIDIIDSIYR FCGNQNLGLC ILNGSGTVTN VTLKQPSINP SDSTITFHGS FTILSISATI IPSDFSPIPN GFSISLAGPQ GQVVGGPVIG PLFSAGPVYL
201: IATTFNNPFY HKFPAEDDGE GGQSPDSGAG DSGQPPESNQ REYCYSSNQL PSDVIWAPTP RQLLPY

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.