Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G252500.1 | Wheat | cytosol | 97.02 | 97.31 |
TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.32 | 96.18 |
Os09t0464300-00 | Rice | nucleus | 76.19 | 76.65 |
Zm00001d005923_P001 | Maize | nucleus | 69.94 | 68.31 |
Zm00001d020768_P001 | Maize | cytosol | 67.26 | 67.87 |
OQU89633 | Sorghum | cytosol | 69.64 | 66.1 |
GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 35.12 | 63.44 |
GSMUA_Achr8P23410_001 | Banana | cytosol | 35.71 | 58.54 |
GSMUA_Achr10P... | Banana | nucleus | 47.62 | 57.35 |
GSMUA_Achr3P06770_001 | Banana | cytosol | 34.52 | 51.1 |
GSMUA_AchrUn_... | Banana | nucleus | 50.89 | 51.04 |
KRH62181 | Soybean | nucleus | 39.29 | 47.14 |
VIT_18s0001g07380.t01 | Wine grape | nucleus | 33.93 | 46.53 |
KRH52892 | Soybean | nucleus | 38.69 | 45.77 |
PGSC0003DMT400024250 | Potato | cytosol, plastid | 36.01 | 44.98 |
KRH72453 | Soybean | nucleus | 36.01 | 44.65 |
CDX83182 | Canola | cytosol | 32.14 | 44.08 |
CDY21451 | Canola | cytosol | 32.14 | 44.08 |
KRH16838 | Soybean | nucleus | 33.33 | 43.75 |
Bra000593.1-P | Field mustard | cytosol | 34.23 | 43.73 |
CDY45266 | Canola | plastid | 25.6 | 41.95 |
Bra026211.1-P | Field mustard | plastid | 25.6 | 41.95 |
AT5G49700.1 | Thale cress | nucleus | 34.23 | 41.67 |
AT1G14490.2 | Thale cress | plastid | 27.08 | 40.44 |
TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 30.65 | 40.23 |
TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 29.76 | 40.0 |
Solyc04g076220.2.1 | Tomato | nucleus | 38.99 | 38.99 |
PGSC0003DMT400005182 | Potato | nucleus | 30.36 | 38.06 |
Solyc12g087950.1.1 | Tomato | nucleus | 29.76 | 37.59 |
TraesCS3B01G198900.1 | Wheat | plastid | 22.62 | 36.19 |
TraesCS6B01G072300.1 | Wheat | nucleus | 30.36 | 36.17 |
TraesCS7B01G187300.1 | Wheat | cytosol, nucleus, peroxisome | 29.17 | 34.51 |
CDY65376 | Canola | nucleus | 27.68 | 33.82 |
TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 28.87 | 33.11 |
TraesCS2B01G470600.1 | Wheat | cytosol, nucleus, peroxisome | 29.76 | 31.95 |
TraesCS1B01G056000.1 | Wheat | mitochondrion | 30.65 | 31.69 |
TraesCS6B01G209300.1 | Wheat | nucleus | 28.87 | 31.39 |
TraesCS3B01G551700.1 | Wheat | cytosol | 26.49 | 29.87 |
TraesCS6B01G306100.1 | Wheat | plastid | 28.57 | 29.18 |
TraesCS7B01G297300.1 | Wheat | cytosol | 25.3 | 29.11 |
TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 27.08 | 28.26 |
Protein Annotations
EnsemblPlants:TraesCS5B01G243200.1 | EnsemblPlantsGene:TraesCS5B01G243200 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
PANTHER:PTHR31100 | PANTHER:PTHR31100:SF41 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
SUPFAM:SSF117856 | TIGR:cd11378 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5B:-:423362254..423363264
Molecular Weight (calculated)
35096.7 Da
IEP (calculated)
8.273
GRAVY (calculated)
-0.321
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFGKPDMSK EGMYQERKDA PATRFATPPP MHHRHAGHGD HHQQQLECFS DEVDSRGTAE MKEPGGSAAG SQLVSGGGVG DGSSIEVAKK RRGRPPGSKN
101: KPKPPVVITR EAEPAAAMRP HVIEIPGGRD VAEALARFAS RRNLGICVLA GTGAVGNVSL RHPCPTAPGA APAVVVFQGR FEILSISATF LPPAMAAVAP
201: QAAAVAAGLS ISLAGPHGQI VGGAVVGPLY AATTIVVVAA AFTNPTFHRL PADDDAPMPV SVSLSGSAEA DEHRARQHQP ESQEQRHQRR HVTPSAAQSV
301: EPCGVPVYAC HPQPQEVMWP LAARAPHQPP PPPPPY
101: KPKPPVVITR EAEPAAAMRP HVIEIPGGRD VAEALARFAS RRNLGICVLA GTGAVGNVSL RHPCPTAPGA APAVVVFQGR FEILSISATF LPPAMAAVAP
201: QAAAVAAGLS ISLAGPHGQI VGGAVVGPLY AATTIVVVAA AFTNPTFHRL PADDDAPMPV SVSLSGSAEA DEHRARQHQP ESQEQRHQRR HVTPSAAQSV
301: EPCGVPVYAC HPQPQEVMWP LAARAPHQPP PPPPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.