Factsheet for TraesCS1B01G056000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G043600.1	Wheat	mitochondrion	98.77	99.07
TraesCS1A01G043100.1	Wheat	mitochondrion, nucleus	97.85	98.15
HORVU1Hr1G008650.1	Barley	mitochondrion, nucleus, peroxisome	96.0	96.89
HORVU7Hr1G020390.1	Barley	mitochondrion	51.38	88.36
HORVU4Hr1G015750.1	Barley	mitochondrion	71.08	83.09
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	47.38	60.16
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	42.77	55.6
TraesCS6B01G072300.1	Wheat	nucleus	45.23	52.13
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	43.69	48.46
TraesCS7B01G187300.1	Wheat	cytosol, nucleus, peroxisome	40.31	46.13
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	42.15	43.77
TraesCS6B01G209300.1	Wheat	nucleus	41.54	43.69
TraesCS6B01G306100.1	Wheat	plastid	43.38	42.86
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	39.08	39.44
TraesCS7B01G297300.1	Wheat	cytosol	34.15	38.01
TraesCS3B01G198900.1	Wheat	plastid	24.0	37.14
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.69	30.65
TraesCS3B01G551700.1	Wheat	cytosol	26.15	28.52

Protein Annotations

EnsemblPlants:TraesCS1B01G056000.1	EnsemblPlantsGene:TraesCS1B01G056000	Gene3D:3.30.1330.80	InterPro:AT-hook_nuclear	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	PFAM:PF03479	PFscan:PS51742	PIRSF:PIRSF016021	SEG:seg
SUPFAM:SSF117856	TIGR:cd11378	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:-:39068681..39069658

Molecular Weight (calculated)

31811.3 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.196

Length

325 amino acids

Sequence
(BLAST)

001: MAWWAGSMGG LDLRNHLAQF GGPAAGGAAM GGAEQAPTTP NSSGSNNHDD SSGAAQDSPT AGAGDNSPNP NAAISGSGPS GGGGGSGGGG SSSGRRPRGR
101: PAGSKNKPKP PIIITRESPN TLRSHVLEIA SGADIMEAVS TFARRRQRGV SVLSGSGVVG NVTLRQPAAP PGSVVTLHGR FEILSLSGAF LPSPCPPGAT
201: GLAVYLAGGQ GQVVGGTVIG ELVASGPVMV VAATFSNATY ERLPLADEEP GEAAAAATGS DGMQLPEGPA PGGNGGMGAA VGVPGLPDPS SMPFYNLPPN
301: LQMPNGGGQM AHDVFGSFRP PPPAF

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.