Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 99.22 | 99.22 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 98.83 | 98.83 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 98.44 | 98.44 |
| Os03t0270000-01 | Rice | nucleus | 86.72 | 86.05 |
| Zm00001d028577_P001 | Maize | nucleus | 87.89 | 82.42 |
| EER95114 | Sorghum | nucleus | 87.11 | 81.99 |
| GSMUA_Achr5P28720_001 | Banana | mitochondrion, peroxisome, plastid | 57.03 | 55.73 |
| KRH73062 | Soybean | cytosol | 48.44 | 54.15 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 51.95 | 53.2 |
| KRH15076 | Soybean | nucleus | 35.55 | 52.3 |
| GSMUA_Achr11P... | Banana | nucleus | 58.98 | 51.36 |
| KRH31005 | Soybean | nucleus | 57.42 | 50.87 |
| GSMUA_Achr7P10630_001 | Banana | plastid | 57.42 | 50.52 |
| GSMUA_Achr6P01060_001 | Banana | nucleus | 53.52 | 48.93 |
| KRG97871 | Soybean | nucleus | 57.03 | 48.34 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 53.12 | 48.23 |
| TraesCS1B01G056000.1 | Wheat | mitochondrion | 60.16 | 47.38 |
| GSMUA_Achr6P04980_001 | Banana | cytosol, nucleus, plastid | 52.73 | 47.04 |
| GSMUA_Achr9P28280_001 | Banana | plastid | 52.73 | 45.0 |
| GSMUA_Achr7P15000_001 | Banana | nucleus | 48.44 | 44.44 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 50.78 | 44.37 |
| CDY68242 | Canola | plastid | 51.17 | 44.11 |
| CDY60321 | Canola | plastid | 50.78 | 43.92 |
| AT3G55560.1 | Thale cress | plastid | 53.12 | 43.87 |
| Bra007176.1-P | Field mustard | plastid | 50.78 | 43.77 |
| Bra003217.1-P | Field mustard | nucleus | 50.78 | 43.62 |
| CDY41211 | Canola | plastid | 50.0 | 43.39 |
| CDX76085 | Canola | plastid | 51.95 | 43.32 |
| Bra014735.1-P | Field mustard | plastid | 51.95 | 43.32 |
| CDY53687 | Canola | nucleus | 50.39 | 43.29 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 52.73 | 42.99 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 54.69 | 42.81 |
| CDY02949 | Canola | plastid | 51.17 | 42.67 |
| TraesCS7B01G187300.1 | Wheat | cytosol, nucleus, peroxisome | 47.27 | 42.61 |
| Solyc05g053000.1.1 | Tomato | nucleus | 51.95 | 42.49 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 48.44 | 40.13 |
| TraesCS2B01G470600.1 | Wheat | cytosol, nucleus, peroxisome | 47.66 | 38.98 |
| TraesCS3B01G198900.1 | Wheat | plastid | 31.64 | 38.57 |
| TraesCS6B01G306100.1 | Wheat | plastid | 46.88 | 36.47 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 44.53 | 35.4 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 38.28 | 33.56 |
| TraesCS3B01G551700.1 | Wheat | cytosol | 35.94 | 30.87 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.23 | 30.65 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G209800.1 | EnsemblPlantsGene:TraesCS4B01G209800 | Gene3D:3.30.1330.80 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0045824 |
| InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF40 | PFAM:PF03479 |
| PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg | SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4B:-:447456869..447457639
Molecular Weight (calculated)
25588.2 Da
IEP (calculated)
6.974
GRAVY (calculated)
-0.197
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSMDGHPLQ GNHGYAHVPA GSNNDEDDAS PPPSAGGGSS GSGRRPRGRP PGSKNKPKPP VVVTRESPNA MRSHVLEIAS GADIVEAIAA FSRRRQRGVS
101: VLSGSGAVTN VTLRQPAGTG AAAVALRGRF EILSLSGAFL PAPAPPGATG LAVYLAGGQG QVVGGSVMGE LLASGPVMVI AATFGNATYE RLPLDQDAEE
201: GAVLSGSEGA ATQLEQQGSG GAAVPPPMYA VPQTPPGDMF GQWGQAAVAR PPPTSF
101: VLSGSGAVTN VTLRQPAGTG AAAVALRGRF EILSLSGAFL PAPAPPGATG LAVYLAGGQG QVVGGSVMGE LLASGPVMVI AATFGNATYE RLPLDQDAEE
201: GAVLSGSEGA ATQLEQQGSG GAAVPPPMYA VPQTPPGDMF GQWGQAAVAR PPPTSF
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.