Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G053800.1 | Wheat | nucleus | 97.16 | 97.16 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 96.81 | 96.81 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 82.62 | 93.2 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 90.43 | 90.75 |
| Os08t0563200-01 | Rice | cytosol | 62.06 | 74.47 |
| Zm00001d031887_P001 | Maize | nucleus | 68.44 | 71.75 |
| KXG25365 | Sorghum | nucleus | 68.44 | 71.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.2 | 71.26 |
| Zm00001d049906_P001 | Maize | nucleus | 65.96 | 70.19 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 57.09 | 68.51 |
| GSMUA_Achr11P... | Banana | cytosol | 40.07 | 65.7 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 41.49 | 61.9 |
| KRG90376 | Soybean | nucleus | 58.51 | 61.57 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 56.74 | 61.54 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 46.1 | 60.19 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 62.41 | 60.07 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 57.09 | 59.63 |
| KRH31728 | Soybean | cytosol | 57.09 | 59.63 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 60.28 | 58.62 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 57.45 | 57.65 |
| Solyc09g089620.1.1 | Tomato | nucleus | 58.16 | 57.34 |
| PGSC0003DMT400044451 | Potato | nucleus | 57.8 | 57.19 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 56.03 | 56.63 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 56.03 | 56.03 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 59.57 | 55.45 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 48.23 | 53.12 |
| TraesCS1B01G056000.1 | Wheat | mitochondrion | 52.13 | 45.23 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 47.87 | 43.69 |
| TraesCS7B01G187300.1 | Wheat | cytosol, nucleus, peroxisome | 43.62 | 43.31 |
| TraesCS2B01G470600.1 | Wheat | cytosol, nucleus, peroxisome | 46.81 | 42.17 |
| TraesCS6B01G306100.1 | Wheat | plastid | 45.74 | 39.21 |
| TraesCS3B01G198900.1 | Wheat | plastid | 29.08 | 39.05 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 40.43 | 39.04 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 42.91 | 37.58 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 36.17 | 30.36 |
| TraesCS3B01G551700.1 | Wheat | cytosol | 31.21 | 29.53 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G072300.1 | EnsemblPlantsGene:TraesCS6B01G072300 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF3 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:48551833..48552681
Molecular Weight (calculated)
28792.0 Da
IEP (calculated)
6.727
GRAVY (calculated)
-0.279
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWDEGR LTESPAAASG LAGNQNRQQL EDAMAAPKVD GESSHSGGGS GQDDEHEPKE GAVVVPANRR PRGRPAGSKN KPKPPIFVTR DSPNALRSHV
101: MEVASGADVA ESIAHFSRRR QRGVCVLSGA GAVADVALRQ PAAPGAVVAL RGRFEILSLS GTFLPGPSPP GSTGLTVYLA GGQGQVVGGS VVGALTAAGP
201: VMVIASTFAN ATYERLPLDD AEEDHQLEAA RMHGAPGGGV PPMMAGDPSA AGMPMYGVPP NLMPGGGGHA APEWAAHARL PY
101: MEVASGADVA ESIAHFSRRR QRGVCVLSGA GAVADVALRQ PAAPGAVVAL RGRFEILSLS GTFLPGPSPP GSTGLTVYLA GGQGQVVGGS VVGALTAAGP
201: VMVIASTFAN ATYERLPLDD AEEDHQLEAA RMHGAPGGGV PPMMAGDPSA AGMPMYGVPP NLMPGGGGHA APEWAAHARL PY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.