Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0428400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | Os08t0428400-01 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG25365 | Sorghum | nucleus | 82.98 | 72.22 |
| Zm00001d049906_P001 | Maize | nucleus | 80.43 | 71.32 |
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 74.89 | 70.4 |
| Zm00001d031887_P001 | Maize | nucleus | 80.43 | 70.26 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 55.32 | 68.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.51 | 68.26 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 66.38 | 66.38 |
| GSMUA_Achr11P... | Banana | cytosol | 46.81 | 63.95 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 75.74 | 62.46 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 76.17 | 62.37 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 74.47 | 62.28 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 75.32 | 62.11 |
| TraesCS6B01G072300.1 | Wheat | nucleus | 74.47 | 62.06 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 74.04 | 61.7 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 74.04 | 61.7 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 68.94 | 60.9 |
| KRG90376 | Soybean | nucleus | 68.51 | 60.07 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 66.38 | 60.0 |
| KRH31728 | Soybean | cytosol | 67.23 | 58.52 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 64.68 | 56.3 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 68.94 | 55.86 |
| Solyc09g089620.1.1 | Tomato | nucleus | 67.23 | 55.24 |
| PGSC0003DMT400044451 | Potato | nucleus | 65.96 | 54.39 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 67.66 | 52.48 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 61.28 | 51.25 |
| Os03t0270000-01 | Rice | nucleus | 56.17 | 51.16 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 60.0 | 50.54 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 60.0 | 50.0 |
| Os02t0448000-00 | Rice | nucleus | 59.15 | 43.99 |
| Os08t0159700-01 | Rice | cytosol | 52.77 | 42.91 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 38.72 | 42.13 |
| Os04t0590200-01 | Rice | cytosol | 52.77 | 40.66 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 56.6 | 39.58 |
| Os06t0326900-01 | Rice | nucleus | 51.91 | 37.89 |
| Os06t0136900-01 | Rice | nucleus | 50.21 | 35.98 |
| Os01t0953801-00 | Rice | nucleus | 38.72 | 34.34 |
| Os01t0246601-00 | Rice | plastid | 33.19 | 34.21 |
| Os08t0478466-01 | Rice | nucleus | 42.55 | 30.86 |
| Os09t0464300-00 | Rice | nucleus | 42.13 | 29.64 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:4346339 | EMBL:AK110263 | InterPro:AT-hook_nuclear | ProteinID:BAD09624.1 |
| ProteinID:BAF24438.1 | ProteinID:BAT06727.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR005175 | EnsemblPlantsGene:Os08g0563200 | EnsemblPlants:Os08t0563200-01 | PFAM:PF03479 | PIRSF:PIRSF016021 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF19 | UniProt:Q6ZBX1 | SUPFAM:SSF117856 |
| UniParc:UPI000023AEAE | RefSeq:XP_015648832.1 | SEG:seg | : | : | : |
Description
Protein of unknown function DUF296 domain containing protein. (Os08t0563200-01)
Coordinates
chr8:-:28201024..28202721
Molecular Weight (calculated)
23941.6 Da
IEP (calculated)
8.518
GRAVY (calculated)
-0.200
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKEPSGDH DHEMNGTSAG GGEPKDGAVV TGRNRRPRGR PPGSKNKPKP PIFVTRDSPN ALRSHVMEVA GGADVAESIA HFARRRQRGV CVLSGAGTVT
101: DVALRQPAAP SAVVALRGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGT LTAAGPVMVI ASTFANATYE RLPLDQEEEE AAAGGMMAPP
201: PLMAGAADPL LFGGGMHDAG LAAWHHARPP PPPPY
101: DVALRQPAAP SAVVALRGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGT LTAAGPVMVI ASTFANATYE RLPLDQEEEE AAAGGMMAPP
201: PLMAGAADPL LFGGGMHDAG LAAWHHARPP PPPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.