Factsheet for Solyc09g089620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118540.2.1
Solyc06g068930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT4G14465.1	Solyc06g068930.1.1	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044451	Potato	nucleus	93.01	93.33
VIT_05s0049g00100.t01	Wine grape	cytosol	65.03	71.54
GSMUA_Achr11P...	Banana	cytosol	43.01	71.51
KRH31728	Soybean	cytosol	66.43	70.37
GSMUA_AchrUn_...	Banana	cytosol	40.56	69.46
KRG90376	Soybean	nucleus	65.03	69.4
GSMUA_Achr2P04080_001	Banana	cytosol	56.99	69.36
Solyc11g006090.1.1	Tomato	nucleus	61.54	69.02
GSMUA_Achr5P19550_001	Banana	cytosol	63.99	67.78
Os08t0563200-01	Rice	cytosol	55.24	67.23
KRH34516	Soybean	cytosol, nucleus, peroxisome	67.83	66.9
Zm00001d018508_P001	Maize	cytosol	56.99	66.53
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	60.14	64.66
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	63.29	64.41
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	56.29	64.4
CDY12779	Canola	cytosol, nucleus, vacuole	62.59	63.48
CDY23160	Canola	cytosol, nucleus, vacuole	61.89	63.44
KRG92293	Soybean	cytosol, mitochondrion, nucleus	66.43	62.71
Zm00001d031887_P001	Maize	nucleus	58.04	61.71
Zm00001d049906_P001	Maize	nucleus	56.99	61.51
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	62.24	60.75
KXG25365	Sorghum	nucleus	57.34	60.74
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	61.54	60.69
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	61.54	60.69
HORVU6Hr1G091740.1	Barley	cytosol	61.54	60.27
OQU85972	Sorghum	cytosol	62.24	59.93
TraesCS4D01G001800.1	Wheat	nucleus	59.09	59.3
TraesCS4A01G312400.1	Wheat	nucleus	58.74	58.95
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	57.69	58.72
HORVU4Hr1G000870.2	Barley	nucleus	58.39	58.19
TraesCS6D01G055500.1	Wheat	cytosol	57.34	58.16
TraesCS6B01G072300.1	Wheat	nucleus	57.34	58.16
TraesCS6A01G053800.1	Wheat	nucleus	56.99	57.8
Solyc06g060500.1.1	Tomato	nucleus	44.41	57.73
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	35.66	53.97
Solyc01g080960.2.1	Tomato	nucleus	46.15	49.81
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	41.96	47.81
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	40.56	47.35
Solyc08g079720.2.1	Tomato	nucleus	47.55	46.58
Solyc08g077010.1.1	Tomato	cytosol	46.5	46.18
Solyc01g091470.2.1	Tomato	nucleus	47.55	45.03
Solyc05g053000.1.1	Tomato	nucleus	48.25	44.09
Solyc08g007560.1.1	Tomato	nucleus	47.55	42.63
HORVU0Hr1G011700.1	Barley	cytosol	30.77	40.74
Solyc12g087950.1.1	Tomato	nucleus	30.77	33.08
Solyc04g076220.2.1	Tomato	nucleus	36.36	30.95

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742
GO:GO:0045824	GO:GO:1900425	InterPro:IPR005175	UniProt:K4CVY8	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF3	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc09g089620.1
EnsemblPlants:Solyc09g089620.1.1	UniParc:UPI000276C753	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein 20 [Source:Projected from Arabidopsis thaliana (AT4G14465) UniProtKB/Swiss-Prot;Acc:Q8GWQ2]

Coordinates

chr9:-:69380798..69381658

Molecular Weight (calculated)

30134.3 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.519

Length

286 amino acids

Sequence
(BLAST)

001: MANWWGGQVG MSGLEPGSCP PMLLTKQLSV NESGSSGENQ EDNDRDNGDH EPKEGAVEVG NRRPRGRPPG SKNKPKPPIF VTRDSPNALR SHIMEVAGGT
101: DVADCIAQFA RRRQRGVCVL SGNGSVANVT LRQPSSPGAV VLQGRFEILS LTGAFLPGPA PPGSTGLTVY LAGGQGQVVG GSVVGPLIAA GPVMIIAATF
201: SNATYERLPL EEEEEVGGDN PSQSQVLTGN SPPTLGSNDG RPQQHQQHEL HDPSSLPIYN FTPNILPNGG QLNHDAYAWT NPRPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.