Factsheet for Solyc08g077010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045203	Potato	nucleus	93.06	92.41
VIT_02s0012g00880.t01	Wine grape	cytosol	69.44	70.92
CDX90445	Canola	plastid	63.89	67.15
KRH58197	Soybean	cytosol	64.24	67.03
AT4G17800.1	Thale cress	cytosol	66.67	65.75
CDX78802	Canola	cytosol	65.62	64.95
KRH04340	Soybean	cytosol	56.6	64.94
Bra040183.1-P	Field mustard	cytosol	65.62	64.51
Bra012639.1-P	Field mustard	cytosol	64.93	64.26
CDY54780	Canola	cytosol	64.93	64.04
Solyc01g080960.2.1	Tomato	nucleus	58.68	63.77
Solyc06g060500.1.1	Tomato	nucleus	45.14	59.09
GSMUA_Achr2P04780_001	Banana	cytosol, nucleus, plastid	50.35	56.86
GSMUA_Achr5P03390_001	Banana	nucleus	51.04	56.76
GSMUA_Achr5P13920_001	Banana	nucleus	40.62	51.54
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	42.01	49.39
Solyc08g079720.2.1	Tomato	nucleus	48.96	48.29
Solyc01g091470.2.1	Tomato	nucleus	48.96	46.69
Solyc09g089620.1.1	Tomato	nucleus	46.18	46.5
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	40.28	46.22
Solyc11g006090.1.1	Tomato	nucleus	39.58	44.71
Solyc08g007560.1.1	Tomato	nucleus	46.53	42.01
Solyc05g053000.1.1	Tomato	nucleus	43.4	39.94
Solyc12g087950.1.1	Tomato	nucleus	29.17	31.58
Solyc04g076220.2.1	Tomato	nucleus	34.72	29.76

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	UniProt:K4CN61	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF21	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc08g077010.1	EnsemblPlants:Solyc08g077010.1.1	UniParc:UPI000276C0C2	SEG:seg

Description

AT-hook motif nuclear-localized protein 23 [Source:Projected from Arabidopsis thaliana (AT4G17800) UniProtKB/Swiss-Prot;Acc:O23620]

Coordinates

chr8:+:60961804..60962670

Molecular Weight (calculated)

30230.3 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.379

Length

288 amino acids

Sequence
(BLAST)

001: MAGLDLSSAS RYVHQLHHPE FNLQIQSEHD ENTKNNPFSD DHHDNNPFDL VGGNSSGPGD LVGRRPRGRP PGSKNKPKPP VIITRESANT LRAHILEIGN
101: GCDVFECISS YARRRQRGIC ILSGSGIVTN VSIRQPASSG NNNNNNNSSS SVVTLNGRFE ILSLSGSFLP PPAPPGATSL TIFLGGGQGQ VVGGSVVGEL
201: IAAGPVIVIA SSFTNVAYER LPLEEDGNTQ GSDGGDGVLN NNNPFPDPSN PGLPFFNLPL NMPNCLNPGS ASVDGWVGNP GLRPPFGV

Best Arabidopsis Sequence Match ( AT4G17800.1 )
(BLAST)

001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF

Arabidopsis Description

AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.