Factsheet for Solyc11g006090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073795	Potato	nucleus	94.51	81.14
VIT_14s0081g00670.t01	Wine grape	mitochondrion	80.0	70.1
Solyc09g089620.1.1	Tomato	nucleus	69.02	61.54
KRH34163	Soybean	nucleus	65.49	59.64
KRG92616	Soybean	nucleus	63.92	58.84
CDY64701	Canola	nucleus	69.41	56.91
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	70.2	56.83
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	68.63	55.73
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	68.63	55.73
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	62.75	55.56
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	62.35	55.02
Solyc06g060500.1.1	Tomato	nucleus	45.49	52.73
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	60.39	52.2
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	45.49	47.35
Solyc01g080960.2.1	Tomato	nucleus	48.24	46.42
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	44.31	45.02
Solyc08g079720.2.1	Tomato	nucleus	49.41	43.15
Solyc01g091470.2.1	Tomato	nucleus	49.8	42.05
Solyc08g077010.1.1	Tomato	cytosol	44.71	39.58
Solyc08g007560.1.1	Tomato	nucleus	49.02	39.19
Solyc05g053000.1.1	Tomato	nucleus	47.45	38.66
Solyc12g087950.1.1	Tomato	nucleus	30.98	29.7
Solyc04g076220.2.1	Tomato	nucleus	38.82	29.46

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0045824
GO:GO:0050832	InterPro:IPR005175	UniProt:K4D4M2	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF8	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc11g006090.1	EnsemblPlants:Solyc11g006090.1.1
UniParc:UPI0002769C2C	SEG:seg	:	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4D4M2]

Coordinates

chr11:+:876985..880355

Molecular Weight (calculated)

25664.2 Da

IEP (calculated)

6.130

GRAVY (calculated)

-0.334

Length

255 amino acids

Sequence
(BLAST)

001: MSNPWWTGQV GLQGVETSSS AGSPSLKKAD LGVSMNDNSG GSGSHDEDRD HSDDPKEGAV EVATRRPRGR PAGSKNKPKP PIFVTRDSPN ALRSHVMEVA
101: NGADVAESIA QFARKRQRGV CVLSATGTVT NVTLRQPSAP GAVMALHGRF EILSLTGAFL PGPAPPGSTG LTIYLAGGQG QVVGGSVVGS LVASGPVMVI
201: ASTFSNATYE RLPLEEEEEG GGPAAQGQLG GGGGSPPGMG GSGEELPIKK SLEXX

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.