Factsheet for Solyc04g082810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025705	Potato	plastid	93.06	87.69
KRH51551	Soybean	plastid	51.43	61.76
Solyc06g060500.1.1	Tomato	nucleus	50.2	55.91
CDY20404	Canola	nucleus	57.96	52.4
CDY45983	Canola	nucleus	59.59	50.69
CDX96613	Canola	nucleus	62.04	50.5
Bra008262.1-P	Field mustard	nucleus	58.78	50.17
CDX87591	Canola	nucleus	56.73	49.64
AT1G20900.1	Thale cress	nucleus	62.86	49.52
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	55.1	48.91
Bra012256.1-P	Field mustard	nucleus	61.63	48.87
Bra003717.1-P	Field mustard	nucleus	57.14	48.78
CDY33658	Canola	nucleus	57.55	48.29
Bra015738.1-P	Field mustard	nucleus	56.73	48.26
Bra016444.1-P	Field mustard	nucleus	62.04	48.25
CDY31511	Canola	nucleus	52.65	47.96
CDX68095	Canola	cytosol	52.65	47.78
AT1G76500.1	Thale cress	nucleus	58.78	47.68
CDY31858	Canola	nucleus	53.06	47.62
CDY01347	Canola	nucleus	52.65	47.43
GSMUA_Achr9P12320_001	Banana	plastid	54.29	47.33
CDX85952	Canola	cytosol	52.24	47.06
CDY29494	Canola	nucleus	51.84	46.35
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	59.18	45.89
TraesCS6A01G277700.1	Wheat	plastid	61.22	45.87
Zm00001d051620_P001	Maize	plastid	59.18	45.74
Zm00001d017825_P001	Maize	plastid	60.41	45.68
Solyc11g006090.1.1	Tomato	nucleus	47.35	45.49
TraesCS6D01G258400.1	Wheat	plastid	60.82	45.29
TraesCS6B01G306100.1	Wheat	plastid	60.82	45.29
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	60.41	45.12
Bra025854.1-P	Field mustard	nucleus	52.65	45.1
Zm00001d045928_P001	Maize	nucleus	56.33	45.1
HORVU6Hr1G070090.1	Barley	plastid	60.82	45.02
Solyc08g079720.2.1	Tomato	nucleus	53.47	44.86
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	61.22	44.64
Solyc01g080960.2.1	Tomato	nucleus	48.16	44.53
KXG19929	Sorghum	nucleus	57.55	44.34
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	44.9	43.82
Os06t0326900-01	Rice	nucleus	57.55	43.79
Solyc01g091470.2.1	Tomato	nucleus	53.47	43.38
TraesCS7A01G225700.1	Wheat	nucleus	57.14	43.34
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	55.1	42.72
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	55.92	42.55
Solyc08g077010.1.1	Tomato	cytosol	49.39	42.01
TraesCS7D01G228800.1	Wheat	nucleus	54.29	41.82
Solyc09g089620.1.1	Tomato	nucleus	47.35	40.56
Solyc08g007560.1.1	Tomato	nucleus	52.24	40.13
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	43.27	39.11
EER88668	Sorghum	cytosol	41.63	37.78
Solyc05g053000.1.1	Tomato	nucleus	46.12	36.1
TraesCS7A01G395400.1	Wheat	cytosol	42.45	35.99
TraesCS7B01G297300.1	Wheat	cytosol	42.45	35.62
HORVU7Hr1G093230.2	Barley	cytosol	42.04	33.99
Solyc12g087950.1.1	Tomato	nucleus	35.51	32.71
Solyc04g076220.2.1	Tomato	nucleus	41.22	30.06

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4BW08	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF5	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc04g082810.2
EnsemblPlants:Solyc04g082810.2.1	UniParc:UPI0002766883	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4BW08]

Coordinates

chr4:+:66347439..66348627

Molecular Weight (calculated)

25039.4 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.185

Length

245 amino acids

Sequence
(BLAST)

001: MDFNHYSLGL MRGESDSDAG ASSGGGAPNR RPRGRPPGSK NKPKPPIIVT RDTPNALRSH VLEVSTDVDI MESISNYARR RGRGVCILSG SGTVTNVNLR
101: QPAASVVTLH GRFEILSLSG TVLPPPAPPA SSGISIFLSG GQGQVVGGSV VGPLIASGPV VLMAASFANA VFERLPLEED DEAPANVPTT QVQPAASQSS
201: GVTGGGEAAG TAHPAEGNMA FGNNYSFSAE LLGWGGNAAN ERPPF

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.