Factsheet for Bra015738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87591	Canola	nucleus	96.88	99.64
Bra008262.1-P	Field mustard	nucleus	81.94	82.23
Bra003717.1-P	Field mustard	nucleus	81.6	81.88
AT1G76500.1	Thale cress	nucleus	84.03	80.13
Bra016444.1-P	Field mustard	nucleus	77.43	70.79
Bra012256.1-P	Field mustard	nucleus	73.26	68.28
Bra025854.1-P	Field mustard	nucleus	66.67	67.13
KRH51551	Soybean	plastid	42.71	60.29
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	48.26	56.73
PGSC0003DMT400025705	Potato	plastid	49.31	54.62
TraesCS6D01G258400.1	Wheat	plastid	55.21	48.33
TraesCS6B01G306100.1	Wheat	plastid	55.21	48.33
TraesCS6A01G277700.1	Wheat	plastid	54.86	48.32
Zm00001d051620_P001	Maize	plastid	53.12	48.27
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	54.86	48.17
HORVU6Hr1G070090.1	Barley	plastid	55.21	48.04
Zm00001d017825_P001	Maize	plastid	53.82	47.84
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	55.21	47.32
GSMUA_Achr9P12320_001	Banana	plastid	45.83	46.98
KXG19929	Sorghum	nucleus	50.35	45.6
Bra011612.1-P	Field mustard	cytosol, nucleus, peroxisome	47.57	45.36
Zm00001d045928_P001	Maize	nucleus	47.92	45.1
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	49.31	44.94
Bra004732.1-P	Field mustard	plastid	39.93	44.06
Bra012639.1-P	Field mustard	cytosol	43.75	43.3
Bra000281.1-P	Field mustard	plastid	38.54	42.53
Bra040183.1-P	Field mustard	cytosol	43.06	42.32
Os06t0326900-01	Rice	nucleus	47.22	42.24
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	46.18	42.09
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	46.88	41.93
TraesCS7A01G225700.1	Wheat	nucleus	46.88	41.8
Bra017324.1-P	Field mustard	cytosol, nucleus, peroxisome	41.32	41.61
Bra016853.1-P	Field mustard	plastid	37.5	41.38
Bra004911.1-P	Field mustard	nucleus	44.1	41.23
TraesCS7D01G228800.1	Wheat	nucleus	45.49	41.2
Bra003217.1-P	Field mustard	nucleus	42.36	40.94
Bra005355.1-P	Field mustard	cytosol	39.93	40.49
Bra007176.1-P	Field mustard	plastid	41.32	40.07
Bra039338.1-P	Field mustard	nucleus	42.71	39.94
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	37.5	39.85
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	43.4	39.81
EER88668	Sorghum	cytosol	36.46	38.89
Bra026211.1-P	Field mustard	plastid	26.74	37.56
Bra014735.1-P	Field mustard	plastid	39.93	37.46
TraesCS7B01G297300.1	Wheat	cytosol	37.15	36.64
TraesCS7A01G395400.1	Wheat	cytosol	36.46	36.33
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	36.81	35.93
Bra019355.1-P	Field mustard	nucleus	40.62	35.78
Bra013649.1-P	Field mustard	nucleus	39.24	34.66
Bra023007.1-P	Field mustard	cytosol, nucleus, peroxisome	39.93	33.92
HORVU7Hr1G093230.2	Barley	cytosol	35.42	33.66
Bra000593.1-P	Field mustard	cytosol	30.56	33.46

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	EnsemblPlantsGene:Bra015738	EnsemblPlants:Bra015738.1	EnsemblPlants:Bra015738.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
UniProt:M4DGW2	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF43	SUPFAM:SSF117856	UniParc:UPI00025420D8	SEG:seg	:	:

Description

AT1G76500 (E=2e-072) SOB3, AHL29 | SOB3 (SUPPRESSOR OF PHYB-4#3); DNA binding

Coordinates

chrA07:+:21087029..21087895

Molecular Weight (calculated)

29344.1 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.456

Length

288 amino acids

Sequence
(BLAST)

001: MDGGYDESGG ASRYFHNLFR PELHHQLQPQ PHLQTHLQPQ PHSDDESDSN KDPGPPDSDP VTSGSSQGKR SRGRPPGSKN KPKPPVIVTR DSPNVLRSHV
101: LEISSGADIV ESVNTYARRR GRGVSVLSGN GAVSNVVLRQ PATTHRSNGG VGAGAGGVVT LHGRFDILSM TGTVLPPPAP PGAGGLSIFV AGAQGQVIGG
201: SVVAPLVASG PVILMAASFS NATFERLPLE DEGGEGGGGG GPQPPTSASP PSGAAQGDLR GNMSGYDQFS GDPHLLGWGA GAASRPSF

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.