Factsheet for Zm00001d017825_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	96.6	95.43
Zm00001d051620_P001	Maize	plastid	92.28	94.32
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	91.36	88.1
TraesCS6D01G258400.1	Wheat	plastid	89.2	87.84
TraesCS6B01G306100.1	Wheat	plastid	88.58	87.23
TraesCS6A01G277700.1	Wheat	plastid	87.96	87.16
HORVU6Hr1G070090.1	Barley	plastid	88.58	86.71
Zm00001d045928_P001	Maize	nucleus	66.05	69.93
GSMUA_Achr9P12320_001	Banana	plastid	58.64	67.62
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	45.68	60.41
PGSC0003DMT400025705	Potato	plastid	47.84	59.62
KRH51551	Soybean	plastid	36.42	57.84
CDY20404	Canola	nucleus	46.6	55.72
CDX87591	Canola	nucleus	48.15	55.71
CDX96613	Canola	nucleus	50.62	54.49
CDY45983	Canola	nucleus	48.15	54.17
Bra015738.1-P	Field mustard	nucleus	47.84	53.82
Bra008262.1-P	Field mustard	nucleus	47.53	53.66
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	45.37	53.26
CDY31511	Canola	nucleus	44.14	53.16
AT1G20900.1	Thale cress	nucleus	50.62	52.73
Zm00001d018508_P001	Maize	cytosol	39.81	52.65
Bra016444.1-P	Field mustard	nucleus	50.62	52.06
Bra012256.1-P	Field mustard	nucleus	49.38	51.78
CDY01347	Canola	nucleus	43.21	51.47
CDY29494	Canola	nucleus	43.21	51.09
CDY33658	Canola	nucleus	45.99	51.03
AT1G76500.1	Thale cress	nucleus	47.22	50.66
CDY31858	Canola	nucleus	42.59	50.55
Zm00001d049906_P001	Maize	nucleus	41.05	50.19
Zm00001d031887_P001	Maize	nucleus	41.67	50.19
Bra025854.1-P	Field mustard	nucleus	44.14	50.0
Bra003717.1-P	Field mustard	nucleus	44.14	49.83
CDX68095	Canola	cytosol	41.36	49.63
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	41.36	49.45
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.15	49.37
CDX85952	Canola	cytosol	40.74	48.53
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	43.52	48.45
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	45.37	47.57
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	45.06	47.1
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	43.21	46.82
Zm00001d028577_P001	Maize	nucleus	37.96	45.05
Zm00001d016132_P001	Maize	nucleus	42.59	44.66
Zm00001d053429_P001	Maize	nucleus	43.21	43.75
Zm00001d036088_P001	Maize	extracellular	36.73	42.5
Zm00001d039249_P001	Maize	cytosol	20.06	41.94
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	42.9	40.76
Zm00001d009031_P001	Maize	mitochondrion, plastid	23.77	37.93
Zm00001d042060_P001	Maize	plastid	27.78	36.73
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	29.63	32.65
Zm00001d020768_P001	Maize	cytosol	30.86	30.03
Zm00001d005923_P001	Maize	nucleus	31.17	29.36

Protein Annotations

EntrezGene:103627644	Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A0A1D6HI35	ProteinID:AQK74171.1	InterPro:AT-hook_nuclear
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175
PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF5
SUPFAM:SSF117856	UniParc:UPI0002216F84	EnsemblPlantsGene:Zm00001d017825	EnsemblPlants:Zm00001d017825_P001	EnsemblPlants:Zm00001d017825_T001	SEG:seg

Description

AT-hook motif nuclear-localized protein 29

Coordinates

chr5:-:207839207..207840181

Molecular Weight (calculated)

31940.6 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.248

Length

324 amino acids

Sequence
(BLAST)

001: MPGMDPGGGG SSRYFHQLLR PQQQQSSPLS PNSHVKMEHH RMSPDKSPVG EAEAGGSGAG ADQPSSSAMV PVEGGGSGSG TGGTPTRRPR GRPPGSKNKP
101: KPPIIVTRDS PNALHSHVLE VAAGADVVDC VAEYARRRGR GVCVLSGGGA VVNVALRQPG ASPPGSMVAT LRGRFEILSL TGTVLPPPAP PGASGLTVFL
201: SGGQGQVIGG SVVGPLVAAG PVVLMAASFA NAVYERLPLE GEEEETAAAA AAGAEPQDQV AQSAGPPGQQ PTASQSSGVT GGDAAGGGGM SLYNLAGNVG
301: AYQLPGDNFG GWSGGGGGGV RPPF

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.